Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1760 ATGGCGGAAGAAGCGCAGTATTCATCTGGTACTGATACGCCCTCCAACAAGCGCAAGTACGAGGACCAGCCGCCGCCGGTTGCCTCCCGCCGGCCGACTGGCTTCTCCGCCCCAATCCTCAACCCCTCCTCCGACTCCGCCCATCCTCCGCCGCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCCAAGAAGCGTGCTCAGGAAATTGCTTCTCGATTGATCAACTCCAGCGGCGGCGTTGGCGCCGGCGCTGGACTCGGCGCTGGGGCTGATGTCAAGCGCCCCAGGGTCGAGAACGGCGGCGGGTTTGATTCGTATGATAAGGGTTTTAGTTCTGGCCCGGACCTGATGCCTCACATGTCAAATTCAAATCCTTCAGCAGTACCTGTTTCCTATGGCTATCAAGGTTCAGGCAAGAAAATTGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACAATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATTCAAGTTACTCGTGACATGGATGCCGATCCCCATTCTTCTACTCGAACAGTTGAACTAGTGGGCACTCCTGATCAAATTGCGAAGGCTGAGCAGTTGGTTAATGATGTTCTCTCTGAGGCTGAATCTGGAGGTTCTGGAATAGTATCGCGAAGATTGCCTGGTCCATCTGGAACTGAACAGTTTGTTATGCGTATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAGGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACCGAAAGGACCTTACAGATTGACGGTTCAAGTGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTATCAGTGAGAATCGTGCAAGAAATTCAGGTATGTCAGGTGGGTATAATCAGCAAGGTTATCAAGCTCGTCCCCCTTCAAATTGGGGGCCTCCACCAATGCAGCAATCTGGTTATGGCTACGGTCAGCAAGGCGGATACTCGGGCCCTTCGTCTCAGTATAACACGCAACAACCTCCTTATCAAGGTTACTCTCAACCCGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTTCTGTTACACCAAATCAACCTGCTACTCAGGGTAGTGGTTATGACTACTACAATCAACAGGCCCCGCAGCAACAGCAGACTGCTGGAGGTTCTGCTGCTACCGGAGATAACTCCGGTTATGGGTATGGTCAGCCACAAGCATCTACTTACAATCAACAGGGCTATTCTCAAGATGGATATGGTGGTGGTTACCATGCACCTCAGTCTGGTTACGGCCAGCCACCTGCTTATGATCAGCAAGGTTATAGTTCTGCTACAAACTATGGAAATGTGGCCAATGCAGGTCAAGATGGGCTCAATTCATACGGGTCGCAGGGGGACTCATCACAGACGGTCCCGCCTGCACAACCATCCTCAGTGAGCCAGCAAGGTTATGGTGCAACAAATCAACAGCCTAGCTCTAACCCTGGTAGTTACCCTCCACCAAATCAGTCAGGCTATGGAATGACTGCACCTTCTCAAACTGGCTATGGAAATCAACCAGCCGCTCAAACTGGTTATGGCGCTAGTTATGGAGCTCCTCAAACTCAGACACAGCCTGCAAATCCGCCTGCATATGGTCAGAGCACTCAGTCACCTAGCACCCCGAGTGGCTATGGGCAGCCTGCCGCATTGTCATCAGGATATTCCAGTTCTCAAGCTCCCGCATCCGGGTACACTCAATCAGATTCCAGTTCTCAACGTGCCCCGCCATCTGGTTATGGTACTGCAGCTCAGCCAGGGTTTGCACCAACGCCTTATGGTGTTCCTCCAACAAGTCAGCCGGGTTACGGGCAAGCTCCACCGACGTATAACTCCTCTTATGGTGCTGGTTACCCTCAGCCTCCATATGATTCGACACCAGCTGCTCAGACAGGGACACAAAGTGGGGTTGCAAAAGCGTCGCCAAAAAGTTGA 2043 51.3 MAEEAQYSSGTDTPSNKRKYEDQPPPVASRRPTGFSAPILNPSSDSAHPPPPSYNNVPPPMDEIQLAKKRAQEIASRLINSSGGVGAGAGLGAGADVKRPRVENGGGFDSYDKGFSSGPDLMPHMSNSNPSAVPVSYGYQGSGKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPHSSTRTVELVGTPDQIAKAEQLVNDVLSEAESGGSGIVSRRLPGPSGTEQFVMRIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVISENRARNSGMSGGYNQQGYQARPPSNWGPPPMQQSGYGYGQQGGYSGPSSQYNTQQPPYQGYSQPASGGYASNWDQSSVTPNQPATQGSGYDYYNQQAPQQQQTAGGSAATGDNSGYGYGQPQASTYNQQGYSQDGYGGGYHAPQSGYGQPPAYDQQGYSSATNYGNVANAGQDGLNSYGSQGDSSQTVPPAQPSSVSQQGYGATNQQPSSNPGSYPPPNQSGYGMTAPSQTGYGNQPAAQTGYGASYGAPQTQTQPANPPAYGQSTQSPSTPSGYGQPAALSSGYSSSQAPASGYTQSDSSSQRAPPSGYGTAAQPGFAPTPYGVPPTSQPGYGQAPPTYNSSYGAGYPQPPYDSTPAAQTGTQSGVAKASPKS 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32462019 32467766 - Sed0027567.1 Sed08g1760 723536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1760 680 MobiDBLite consensus disorder prediction 455 615 - -
Sed08g1760 680 Gene3D K Homology domain, type 1 231 329 IPR036612 GO:0003723(InterPro)
Sed08g1760 680 Gene3D K Homology domain, type 1 137 230 IPR036612 GO:0003723(InterPro)
Sed08g1760 680 MobiDBLite consensus disorder prediction 1 63 - -
Sed08g1760 680 CDD KH-I 144 209 - -
Sed08g1760 680 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 136 491 - GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Sed08g1760 680 MobiDBLite consensus disorder prediction 336 440 - -
Sed08g1760 680 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
Sed08g1760 680 Pfam KH domain 145 209 IPR004088 GO:0003723(InterPro)
Sed08g1760 680 Pfam KH domain 237 303 IPR004088 GO:0003723(InterPro)
Sed08g1760 680 FunFam KH domain-containing protein 230 328 - -
Sed08g1760 680 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Sed08g1760 680 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 228 308 IPR036612 GO:0003723(InterPro)
Sed08g1760 680 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 145 220 IPR036612 GO:0003723(InterPro)
Sed08g1760 680 MobiDBLite consensus disorder prediction 640 680 - -
Sed08g1760 680 MobiDBLite consensus disorder prediction 308 680 - -
Sed08g1760 680 MobiDBLite consensus disorder prediction 308 328 - -
Sed08g1760 680 MobiDBLite consensus disorder prediction 44 58 - -
Sed08g1760 680 SMART kh_6 232 306 IPR004087 GO:0003676(InterPro)
Sed08g1760 680 SMART kh_6 140 213 IPR004087 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1760 K13210 - - csv:101216803 1080.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1760 Sed-Chr8:32462019 Sed11g1801 Sed-Chr11:32879993 2.00E-48 dispersed
Sed11g0890 Sed-Chr11:21558552 Sed08g1760 Sed-Chr8:32462019 1.20E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37