Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1764 ATGGTGAGGAAATGTTCACATTGTGGGAATGTGGGTCACAATTCAAGAACTTGCATCAATATTAAAAAGGAAAAGGGTAGAGGAAAATTGAAGCTTTTTGGAGTTGAACTTGATGGATCAGCTAATTACAATTCATCTTCTTCAGCAGCAACAGCCTTGTTGATGAACAAAAGTCTCACCTTGGATTGCTTGCCTTCTTCTTCTCAAAAATTGTCAAGTGGGTATCTCTCACATGCCCAAATCATCAAAACCCATCAAAGAAAAAAAGGTGTACCATGGAGTGAAGAAGAGCACAATTTTTTTGTAATTGGACTGGAAAGGCTTGGAAAAGGAGATTGGAGAGGAATTTCAAGGAAATTTGTGACCACAAGAACTCCAACCCAAGTGGCTAGCCATGCACAAAAGTACTTTCTTCGACTCAACAAAAGAAAGCAACGTCGATCCACCCTTTTCCATGCTGGTACAAGGGACAAATTCACAATGCAAGTTGTTGAGGACAACAATTCCAAATTACCAAACAACCCTCCTCCATCCATTTCATTTGGGATTCCATCAAATCCAACTCCAATTCATAATAATATTTCCACCTCAGCAATTTTGCCTTTGAACAACAACAATCATCATCAAAATTCAGTATTGCCCATTTGGTTTGGTAATGAAGATCATCAGCCAATCAAATTTCTTAAAAACCCCACCAAATCTTCAAGCTCAATCAGCTATTTTCATGGAAAACAAAACAAAGCAAGCCATCATCAAGCTCCTAATTTGCAGCTAAGTTTGTCCAGTACAACAAAGCCAATTATGGAACAAGCTAAGACTTGCTGCAGAAGCATAGCCATTAATGGAGCCATTTCAGTGACATGA 864 38.66 MVRKCSHCGNVGHNSRTCINIKKEKGRGKLKLFGVELDGSANYNSSSSAATALLMNKSLTLDCLPSSSQKLSSGYLSHAQIIKTHQRKKGVPWSEEEHNFFVIGLERLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNKRKQRRSTLFHAGTRDKFTMQVVEDNNSKLPNNPPPSISFGIPSNPTPIHNNISTSAILPLNNNNHHQNSVLPIWFGNEDHQPIKFLKNPTKSSSSISYFHGKQNKASHHQAPNLQLSLSSTTKPIMEQAKTCCRSIAINGAISVT 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32496725 32500684 + Sed0007074.1 Sed08g1764 723540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1764 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 141 IPR017930 -
Sed08g1764 287 SMART sant 89 139 IPR001005 -
Sed08g1764 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 139 IPR006447 GO:0003677(InterPro)
Sed08g1764 287 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed08g1764 287 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Sed08g1764 287 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Sed08g1764 287 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Sed08g1764 287 Gene3D - 91 142 - -
Sed08g1764 287 FunFam transcription factor MYB1R1 91 142 - -
Sed08g1764 287 PANTHER TRANSCRIPTION FACTOR KUA1 1 229 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Sed08g1764 287 CDD SANT 92 137 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1764 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1764 Sed-Chr8:32496725 Sed12g1771 Sed-Chr12:28847510 1.00E-41 dispersed
Sed11g0889 Sed-Chr11:21422563 Sed08g1764 Sed-Chr8:32496725 2.90E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39371 PF00249 Myb_DNA-binding 5.60E-10 CL0123 Sed TF