Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1779 ATGGCTGGTATGGCACCTGAAGGAGCCCAATTTGATGCACGTCAATATGATTCCAAGATGAATGATTTACTTGGGGGAGATGGCCAAGATTTTTTCACATCATATGATGAAGTCTATGAAAGTTTTGATTCCATGGGCTTGCAGGAGAATCTCTTAAGAGGAATATACGCTTACGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGTATCGTTCCCTTCTGCAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCTACTTTCTGCTCTGGAATTTTGCAGCAGCTGGATTATGGGCTAGTTGATTGCCAGTCATTAGTTCTTGCACCCACACGAGAATTGGCACAGCAGATCGAAAAGGTTATGCGTGCATTAGGAGATTATCTTGGTGTCAAGGTGCATGCTTGTGTTGGTGGAACCAGTGTCCGTGAAGATCAACGCATTCTCGCAAGTGGTGTTCATGTTGTTGTTGGCACCCCTGGTCGCGTGTTTGATATGCTCCGGCGGCAGTCACTTCGCTCTGATCACATTAAGATGTTCGTGCTAGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTACGATATTTTCCAGCTTCTCCCACCTAAGATTCAGGTTGGGGTTTTCTCTGCTACCATGCCCCCTGAGGCTCTTGAGATAACCAGGAAATTTATGAACAAACCTGTTCGAATTTTGGTAAAACGTGATGAGCTCACTCTTGAAGGTATCAAGCAGTTCTATGTCAACGTTGATAAAGAAGAGTGGAAACTTGAGACCCTTTGCGACCTCTATGAAACTTTGGCAATTACCCAGAGTGTCATATTTGTTAATACTAGGCGCAAAGTAGATTGGCTTACCGATAAGATGCGCAGTCGTGACCACACTGTTTCTGCCACACATGGAGATATGGACCAAAACACTAGGGATATCATCATGCGGGAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCCAGAGGAATTGATGTCCAACAAGTTTCCCTTGTGATAAATTATGATCTTCCTACTCAGCCAGAGAATTACCTGCATCGAATTGGTCGTAGTGGACGATTTGGAAGGAAGGGCGTTGCAATCAATTTCGTCCCCACAGAGGATGAAAGGATGCTGTTTGACATCCAAAAGTTCTACAATGTCGTAGTTGAGGAGCTGCCAGCCAATGTTGCCGACCTCATTTAA 1242 44.69 MAGMAPEGAQFDARQYDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRSDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVPTEDERMLFDIQKFYNVVVEELPANVADLI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32579374 32583311 - Sed0000592.1 Sed08g1779 723555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1779 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Sed08g1779 413 Gene3D - 30 248 IPR027417 -
Sed08g1779 413 SMART helicmild6 293 374 IPR001650 -
Sed08g1779 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Sed08g1779 413 SMART ultradead3 59 256 IPR014001 -
Sed08g1779 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Sed08g1779 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Sed08g1779 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Sed08g1779 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Sed08g1779 413 CDD SF2_C_DEAD 253 383 - -
Sed08g1779 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed08g1779 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Sed08g1779 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Sed08g1779 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Sed08g1779 413 CDD DEADc_EIF4A 45 242 - -
Sed08g1779 413 Gene3D - 249 413 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0066 Sed-Chr6:402147 Sed08g1779 Sed-Chr8:32579374 5.90E-227 dispersed
Sed08g1779 Sed-Chr8:32579374 Sed11g0873 Sed-Chr11:21168819 9.00E-233 dispersed
Sed05g1301 Sed-Chr5:25302551 Sed08g1779 Sed-Chr8:32579374 1.10E-142 transposed
Sed11g0872 Sed-Chr11:21168701 Sed08g1779 Sed-Chr8:32579374 1.20E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1779 K03257 - csv:101223055 791.186