Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1780 ATGTATCAATCTGAAGATGGGATTCCGTTGAACACCACGGCCGTCGCCATCGACAAGGATAAGAACAGCCAGCACGCCGTACGCTGGGCTATCGATCATCTCGTCATAAGTAATCCGCTTATTATCCTTATCCATGTCAGGCATAAACATTATCAACATCAGGGTGCGAGCGATTCTGAAAATGGTGAAACTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCGCGGAAAGGGGTTCATCTGAAGGAGGTCATTCTTGACGATACCGATATTCCCAAAGCACTTGTTGACTATGTTCACAAGAATTGCATCAACAATTTTGTTGTCGGAGCTTCAACAAGGAGTGCTCTAGCTAGGAAATTTAAAGGTCATGATGTCTCAACCAGCATAATAAAAATTGCCCCGGACTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCTGTGCCACCAAAACAACCATCGCCGCGTGGAATTCAACCAGATGGCAGTAATGAACAAGAAAATGGAGCCAAAAGGCCACCAGCAAGGGAAGGATGGAAAAGTGCAGGTTCAGATAGGATGCTTTGTGAAAGGAATGGTACAAAACCTGCAAAAGCGTTGACTCGTGAGAGGCCTAAAACTTCCCCAAATAATATATCGTTGGAAAATCTCGAGGACCCAAATCATGGGTCTAGGTCTTCATTCAGCCGCGATTCGATCTCTGATGACAATATGTTGACTGCACATATGGCTTTTGGTTCAATGGATCTGAGTGATCAAAATTTAGATTTCAGTAATTTGTCAATGGATTCTGCTTCTGCACAATCGACACGAGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCGATCTCAGCCAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGACTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCTGAAAGAGAAGCCCAAAGAAGAAAACAGGCTGAAATGAAGGCTAAAAAAGAGGCAGAAGAGAAAAAACGAGCATTGAGTGCTTTAGCTCATAATGATGTTCGATATCGAAAATATACCATAGAAGAGATAGAGGAATCTACCGAAAAGTTCTCTGATAAGTTGAAGATTGGAGAAGGTGGGTATGGTCCTGTTTATGGAGGCAAACTTGATCATACGGCTGTTGCAATTAAAGTTTTAAGACCGGACGCTGCTCAAGGACGAAAGCAATTCCAGCAAGAGGTGGAGGTCCTTTGTTGTATCAGACATCCAAACATGGTGCTCCTTCTTGGGGCATGCCCCGAATATGGTTGCTTGGTATATGAATACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATATCTGCTGAAATTGCAACTGCGCTCCTTTTTCTTCACCAAGCGAAGCCAGAACCACTTGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAACTACGTGAGCAAAATCAGTGACGTTGGCTTGGCCCGGTTAGTTCCACCTTCTGTAGCTGATCAAGTCACTCAGTATCACATGACTTCAGCAGCTGGTACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGAAAGTTAACAACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTCAATGAGATGTTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGATAGACCAGATATTGGAACGGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACATGAGGGTCGGAATCCCTTTCCACGCTCTGCCGCCTCAAGTTCCAGTTCCGGATTCGAGAACTAA 2157 44.14 MYQSEDGIPLNTTAVAIDKDKNSQHAVRWAIDHLVISNPLIILIHVRHKHYQHQGASDSENGETDAQQLFVPYRGYCARKGVHLKEVILDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGHDVSTSIIKIAPDFCSVYVISKGKIISARAALRPVANTAVPPKQPSPRGIQPDGSNEQENGAKRPPAREGWKSAGSDRMLCERNGTKPAKALTRERPKTSPNNISLENLEDPNHGSRSSFSRDSISDDNMLTAHMAFGSMDLSDQNLDFSNLSMDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKAKKEAEEKKRALSALAHNDVRYRKYTIEEIEESTEKFSDKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKISAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFNEMLDPTISDCPLEEAINFAKLALKCAELRKRDRPDIGTVIVPELNRLRDIGRSSDKHEGRNPFPRSAASSSSSGFEN 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32600125 32604960 - Sed0005280.1 Sed08g1780 723556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1780 718 MobiDBLite consensus disorder prediction 163 250 - -
Sed08g1780 718 MobiDBLite consensus disorder prediction 691 718 - -
Sed08g1780 718 Pfam Universal stress protein family 15 145 IPR006016 -
Sed08g1780 718 SUPERFAMILY Protein kinase-like (PK-like) 405 681 IPR011009 -
Sed08g1780 718 CDD STK_N 12 149 - -
Sed08g1780 718 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 394 494 - -
Sed08g1780 718 ProSiteProfiles Protein kinase domain profile. 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1780 718 Gene3D HUPs 10 148 IPR014729 -
Sed08g1780 718 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 146 - -
Sed08g1780 718 Coils Coil 288 308 - -
Sed08g1780 718 Pfam Protein tyrosine and serine/threonine kinase 427 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1780 718 PANTHER OS02G0152300 PROTEIN 14 699 IPR051348 -
Sed08g1780 718 FunFam U-box domain-containing protein 51 495 695 - -
Sed08g1780 718 CDD STKc_IRAK 428 688 - -
Sed08g1780 718 SMART serkin_6 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1780 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1780 718 Gene3D Transferase(Phosphotransferase) domain 1 495 702 - -
Sed08g1780 718 Coils Coil 348 400 - -
Sed08g1780 718 Gene3D Phosphorylase Kinase; domain 1 387 494 - -
Sed08g1780 718 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1780 Sed-Chr8:32600125 Sed08g1782 Sed-Chr8:32600125 0.00E+00 dispersed
Sed08g1780 Sed-Chr8:32600125 Sed08g1781 Sed-Chr8:32600125 0.00E+00 tandem
Sed11g0867 Sed-Chr11:21157119 Sed08g1780 Sed-Chr8:32600125 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79646 PF07714 PK_Tyr_Ser-Thr 7.60E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1780 - - - 0.0