Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1781 ATGTATCAATCTGAAGATGGGATTCCGTTGAACACCACGGCCGTCGCCATCGACAAGGATAAGAACAGCCAGCACGCCGTACGCTGGGCTATCGATCATCTCGTCATAAGTAATCCGCTTATTATCCTTATCCATGTCAGGCATAAACATTATCAACATCAGGGTGCGAGCGATTCTGAAAATGGTGAAACTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCGCGGAAAGGGGTTCATCTGAAGGAGGTCATTCTTGACGATACCGATATTCCCAAAGCACTTGTTGACTATGTTCACAAGAATTGCATCAACAATTTTGTTGTCGGAGCTTCAACAAGGAGTGCTCTAGCTAGGAAATTTAAAGGTCATGATGTCTCAACCAGCATAATAAAAATTGCCCCGGACTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCTGTGCCACCAAAACAACCATCGCCGCGTGGAATTCAACCAGATGGCAGTAATGAACAAGAAAATGGAGCCAAAAGGCCACCAGCAAGGGAAGGATGGAAAAGTGCAGGTTCAGATAGGATGCTTTGTGAAAGGAATGGTACAAAACCTGCAAAAGCGTTGACTCGTGAGAGGCCTAAAACTTCCCCAAATAATATATCGTTGGAAAATCTCGAGGACCCAAATCATGGGTCTAGGTCTTCATTCAGCCGCGATTCGATCTCTGATGACAATATGTTGACTGCACATATGGCTTTTGGTTCAATGGATCTGAGTGATCAAAATTTAGATTTCAGTAATTTGTCAATGGATTCTGCTTCTGCACAATCGACACGAGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCGATCTCAGCCAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGACTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCTGAAAGAGAAGCCCAAAGAAGAAAACAGGCTGAAATGAAGGCTAAAAAAGAGGCAGAAGAGAAAAAACGAGCATTGAGTGCTTTAGCTCATAATGATGTTCGATATCGAAAATATACCATAGAAGAGATAGAGGAATCTACCGAAAAGTTCTCTGATAAGTTGAAGATTGGAGAAGGTGGGTATGGTCCTGTTTATGGAGGCAAACTTGATCATACGGCTGTTGCAATTAAAGTTTTAAGACCGGACGCTGCTCAAGGACGAAAGCAATTCCAGCAAGAGGTGGAGGTCCTTTGTTGTATCAGACATCCAAACATGGTGCTCCTTCTTGGGGCATGCCCCGAATATGGTTGCTTGGTATATGAATACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATATCTGCTGAAATTGCAACTGCGCTCCTTTTTCTTCACCAAGCGAAGCCAGAACCACTTGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAACTACGTGAGCAAAATCAGTGACGTTGGCTTGGCCCGGTTAGTTCCACCTTCTGTAGCTGATCAAGTCACTCAGTATCACATGACTTCAGCAGCTGGTACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGAAAGTTAACAACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTCAATGAGATGTTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGATAGACCAGATATTGGAACGGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACATGAGGGTCGGAATCCCTTTCCACGCTCTGCCGCCTCAAGTTCCAGTTCCGGTATGAGGTCGCAGTCATCAAATGAGGATTCGAGAACTAATTATTATACAGTTGAAGGAAGTTAG 2208 43.98 MYQSEDGIPLNTTAVAIDKDKNSQHAVRWAIDHLVISNPLIILIHVRHKHYQHQGASDSENGETDAQQLFVPYRGYCARKGVHLKEVILDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGHDVSTSIIKIAPDFCSVYVISKGKIISARAALRPVANTAVPPKQPSPRGIQPDGSNEQENGAKRPPAREGWKSAGSDRMLCERNGTKPAKALTRERPKTSPNNISLENLEDPNHGSRSSFSRDSISDDNMLTAHMAFGSMDLSDQNLDFSNLSMDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKAKKEAEEKKRALSALAHNDVRYRKYTIEEIEESTEKFSDKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKISAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFNEMLDPTISDCPLEEAINFAKLALKCAELRKRDRPDIGTVIVPELNRLRDIGRSSDKHEGRNPFPRSAASSSSSGMRSQSSNEDSRTNYYTVEGS 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32600125 32604960 - Sed0005280.2 Sed08g1781 723557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1781 735 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 394 494 - -
Sed08g1781 735 FunFam U-box domain-containing protein 51 495 695 - -
Sed08g1781 735 MobiDBLite consensus disorder prediction 163 250 - -
Sed08g1781 735 Gene3D HUPs 10 148 IPR014729 -
Sed08g1781 735 Gene3D Transferase(Phosphotransferase) domain 1 495 702 - -
Sed08g1781 735 CDD STK_N 12 149 - -
Sed08g1781 735 Gene3D Phosphorylase Kinase; domain 1 389 494 - -
Sed08g1781 735 ProSiteProfiles Protein kinase domain profile. 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1781 735 Coils Coil 288 308 - -
Sed08g1781 735 Pfam Universal stress protein family 15 145 IPR006016 -
Sed08g1781 735 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 146 - -
Sed08g1781 735 MobiDBLite consensus disorder prediction 705 735 - -
Sed08g1781 735 CDD STKc_IRAK 428 688 - -
Sed08g1781 735 SMART serkin_6 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1781 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1781 735 Coils Coil 348 400 - -
Sed08g1781 735 PANTHER OS02G0152300 PROTEIN 14 708 IPR051348 -
Sed08g1781 735 MobiDBLite consensus disorder prediction 691 735 - -
Sed08g1781 735 SUPERFAMILY Protein kinase-like (PK-like) 405 681 IPR011009 -
Sed08g1781 735 Pfam Protein tyrosine and serine/threonine kinase 427 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1781 735 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1781 Sed-Chr8:32600125 Sed08g1783 Sed-Chr8:32600125 0.00E+00 dispersed
Sed08g1780 Sed-Chr8:32600125 Sed08g1781 Sed-Chr8:32600125 0.00E+00 tandem
Sed08g1781 Sed-Chr8:32600125 Sed08g1782 Sed-Chr8:32600125 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79647 PF07714 PK_Tyr_Ser-Thr 8.00E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1781 - - - 0.0