Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1784 ATGGAGGAAATGTCTCAAGCGGTTGTGGTGCCATTTAGGGTAGGTGATTCAGTCTGTGATAACCCCATCATGGAAACTCCCATGGATATCACAAGACTTAAGCTAATGGCTGATACTGCTGGTTTGTTATCTGATTTTGTGACTAAGTCTTCTGACGACCCGACTGAAGTAGGTTCCGATGATTGTAAGTGTTCTAATGAGGAGGAAGAGGTTGTTATTACTGAAGTTTCGGTTATAAATGATGATAAATGCAAAGATGTTCCGTTGTCGGTCGTGTTGTGTGAAAATAATAATAATTGGGTTGCAGCGGATGAGGTGCTATTCCATGGAAGTGAGGAAGATGATTCTTTATCTTTTGAGGGTGATCACATTTATGACAGCTCTTGTTCGCATTCAGTGGTTAGTGAGACTAGCAGCATTTGTGGTGATGACTTTTTAGGTTCTGAGGTGTCTTATTTTGAAGCATTTAGTTCAATCAGCAACGCAAAGGATGTTAGCAGTGTTGAAGTTGCAACTACAACCAATCTTGGAGAATCTTATGCCGAAAGTCTCGAGACTCAGATTGCGAGTTCTTCTTCTGGAGCAGTTAGCCTTGAAGAAGACGTTAGAGATGGGTTAGGCATTGAAGCATGTAACATGGTCATCCAGCTTCCACTTGAGAAAAGGGCAAGCGGACCAGTCGGTCGAAGTGTTTTTGAGGTAGACTGTGTGCCCCTTTGGGGATTTACATCAGTATGTGGAAGAAGACCTGAGATGGAAGATGCAGCGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTATTGGGGACCAAGTTCTTGATGGCTCAAGCAAGGCTATAGCTGACCAAAGTGTTCATTTCTTTGGAGTTTATGATGGTCATGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGAATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCCGCTGGCAATTTGAAGGTTAACTGCCAAGAGTTATGGAAAAAGGCATTCACCAAAGTTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAAATCTGGGGTTGAACCTGTTGCACCCGAAACTGTAGGATCCACTGCTGTTGTTGCAATTATTTGTGCCTCTCATATTATCGTGGCAAACTGTGGAGACTCGCGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATTGCATTGTCTGTGGATCACAAACCAAATAGAGAAGATGAATACGAAAGGATTGAAGCTGCGGGAGGAAAGGTTATACAGTGGAACGGGTACCGTGTTTTCGGTGTTCTTGCAATGTCAAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCGGAGCCGGAAGTGATGTTCCTCCCTCGAGCGAAAGACGATGAATGCCTCATTCTAGCCAGTGATGGTTTGTGGGACGTGATGTCGAATGAAGAGGCATGTGACCTGGCACGGAGACGAATCCTACTCTGGCATAAGAAGAACGGCGCCCCTTCGCCTTCTGAGAGGGGTATTGGGATCGATCCTGCGGCTCAAGCAGCTGCGGAATACCTCTCGAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACAGTAATTGTGATTGATTTGAAAGCTCAAAGGAAATTCAAGACAAAATCATAA 1662 44.34 MEEMSQAVVVPFRVGDSVCDNPIMETPMDITRLKLMADTAGLLSDFVTKSSDDPTEVGSDDCKCSNEEEEVVITEVSVINDDKCKDVPLSVVLCENNNNWVAADEVLFHGSEEDDSLSFEGDHIYDSSCSHSVVSETSSICGDDFLGSEVSYFEAFSSISNAKDVSSVEVATTTNLGESYAESLETQIASSSSGAVSLEEDVRDGLGIEACNMVIQLPLEKRASGPVGRSVFEVDCVPLWGFTSVCGRRPEMEDAAATVPRFSELPVQMLIGDQVLDGSSKAIADQSVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAAGNLKVNCQELWKKAFTKVFLKVDAEIGGKSGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPIALSVDHKPNREDEYERIEAAGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLILASDGLWDVMSNEEACDLARRRILLWHKKNGAPSPSERGIGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKFKTKS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32608837 32613170 + Sed0021289.1 Sed08g1784 723560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1784 553 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Sed08g1784 553 PANTHER PROTEIN PHOSPHATASE 191 542 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Sed08g1784 553 FunFam Protein phosphatase 2C 16 227 553 - -
Sed08g1784 553 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Sed08g1784 553 Pfam Protein phosphatase 2C 260 536 IPR001932 -
Sed08g1784 553 SUPERFAMILY PP2C-like 236 544 IPR036457 -
Sed08g1784 553 CDD PP2Cc 241 543 IPR001932 -
Sed08g1784 553 SMART PP2C_4 229 541 IPR001932 -
Sed08g1784 553 Gene3D - 226 553 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2235 Sed-Chr6:45984927 Sed08g1784 Sed-Chr8:32608837 9.40E-142 dispersed
Sed06g2236 Sed-Chr6:45984927 Sed08g1784 Sed-Chr8:32608837 2.60E-64 dispersed
Sed07g1086 Sed-Chr7:7969539 Sed08g1784 Sed-Chr8:32608837 2.00E-61 dispersed
Sed07g1420 Sed-Chr7:10955097 Sed08g1784 Sed-Chr8:32608837 1.90E-39 dispersed
Sed08g1784 Sed-Chr8:32608837 Sed12g1820 Sed-Chr12:29419803 9.00E-71 dispersed
Sed13g2205 Sed-Chr13:26558900 Sed08g1784 Sed-Chr8:32608837 2.80E-26 dispersed
Sed14g0603 Sed-Chr14:6105030 Sed08g1784 Sed-Chr8:32608837 4.40E-25 dispersed
Sed08g1784 Sed-Chr8:32608837 Sed08g1785 Sed-Chr8:32608837 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1784 K14497 - csv:101207918 929.087