Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1788 ATGATGACAAGCGCTTTACGAAGAAACGAGCTTTTCGAAGCAGCGATTGAAGGCAATGTGGCAACGCTGTTGGAGCTGCTCCAACAGGATCCTCTGTTACTTGACAGAGTGGACGATTCCGGCGACACTCCTCTCCACGTGGCAGCCCTTCGCGGCCACGTCAGATTCGTGGATGAGATTTTAAATCGAAGGCCTGAGCTGGCAAGAGAGCCGGATTCCGGCGGGTCTTCGGCCCTCCACGTGGCGGCGGCGAAAGGGTTTGTGCAAATCGTGAAGCTGTTTTTGAAAATTGATTCTGATTTGTGCTTTTTGGGAGACGGAGATGGGCGGAGCCCTCTTCAGGTGGCCGCCGTGAGAGGCCGGGTTGGGGCGGTGGCGGAGATCGTCGGAGCCAGACCGGAGGCCGTTAGAACCGCCGTGGACGGCGGCGGGACGGTGTTGCATTTGTGTGTGAAGCATAACCAGGCGGAGGCTCTTCGGATGTTGATTGAATCTGCGGCTGGTGATGATAGTTTGGTTAATTCTAAGGATGATTATGGATTCACTGTTCTTCATTTAGCAGTTTCCAATAAACAGCTTCAGACAGTAGAATATTTAATCAACAGCACTGGAATTAAAGTAAACGCTTTAACTGCAAATGGATTTACAGCTCTAGACATTCTAATTCAAAGCCACAGAGATTTAAAGGACATGGCCATTTCACAAGCTCTCACAGCCGCCGGAGCCTTCCAAACCACCACAAGCAAAACCAAAAACAACCCTCTGCCACAGCCATCTTTATCTTCTTATTGGCCTAACAAACTACAAGTAACCGTAGTTATGAGGCGAATTATCTCTGCCATTTTCGACGACAGAAACGAGTCGTGGATTTTGAGGAAGCAGGAGGCATTACTGGTGGGCGCATCGCTGATTGCAACAATGGCTTTTCAAGCCGGAATGAACCCTCCCGGTGGCGTATGGCAAGCAGACGATCCCGCGATGAATCGAACCGCGGGAACATCCGTATTGGCTGAAAAGCACCTAAAGCTTTATAACAAGTTCCTGGCGTTTAACACGACGGGATTCACGGCTTCCATGATTGTGATTTTGATTCTCATCACTGGACTGACCTCTAGGCATCCGATCTTTGTGAGGATTCTTATTGTTGCCATGTGGGTGGCAGTGTGTTCTATGGCTTACACTTATGGATACTCTATTAGATTCTTCACTCCCAAAGAATATGACGCCCTCATCTTTAGGATGACCATTGTCGTTGCGTTCGTTGTTTCTGCTTCCTTCATTTTGTTCTTCCTTCAGAAGCTCTTCTACATTCTAACTCATCATGAGAAGAAGGTCAATGTCCGATCGCCAAAACCGTCCCCGAATCAAATCCCTTGA 1377 48.73 MMTSALRRNELFEAAIEGNVATLLELLQQDPLLLDRVDDSGDTPLHVAALRGHVRFVDEILNRRPELAREPDSGGSSALHVAAAKGFVQIVKLFLKIDSDLCFLGDGDGRSPLQVAAVRGRVGAVAEIVGARPEAVRTAVDGGGTVLHLCVKHNQAEALRMLIESAAGDDSLVNSKDDYGFTVLHLAVSNKQLQTVEYLINSTGIKVNALTANGFTALDILIQSHRDLKDMAISQALTAAGAFQTTTSKTKNNPLPQPSLSSYWPNKLQVTVVMRRIISAIFDDRNESWILRKQEALLVGASLIATMAFQAGMNPPGGVWQADDPAMNRTAGTSVLAEKHLKLYNKFLAFNTTGFTASMIVILILITGLTSRHPIFVRILIVAMWVAVCSMAYTYGYSIRFFTPKEYDALIFRMTIVVAFVVSASFILFFLQKLFYILTHHEKKVNVRSPKPSPNQIP 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32634676 32637044 + Sed0013407.1 Sed08g1788 723564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1788 458 ProSiteProfiles Ankyrin repeat profile. 40 72 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 Pfam Ankyrin repeats (3 copies) 11 99 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 Pfam Ankyrin repeats (3 copies) 116 209 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 Pfam Domain of unknown function 288 399 IPR026961 -
Sed08g1788 458 SMART ANK_2a 179 209 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 213 246 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 6 35 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 SMART ANK_2a 142 172 IPR002110 GO:0005515(InterPro)
Sed08g1788 458 Gene3D - 2 259 IPR036770 -
Sed08g1788 458 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
Sed08g1788 458 SUPERFAMILY Ankyrin repeat 8 224 IPR036770 -
Sed08g1788 458 PANTHER HOMEOBOX PROTEIN WARIAI 11 436 - -
Sed08g1788 458 ProSiteProfiles Ankyrin repeat region circular profile. 40 63 - -
Sed08g1788 458 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1788 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1788 Sed-Chr8:32634676 Sed11g0850 Sed-Chr11:19527112 4.10E-21 dispersed
Sed08g1788 Sed-Chr8:32634676 Sed06g2251 Sed-Chr6:46076480 2.70E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58