Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1789 ATGGACGGAGCTGCTCCGTACAATCCCCGCACCGTGGAAGAGGTCTTTAGGGATTTCAAAGGCCGGCGAGCCGGTTTGGTGAAGGCTCTCACTACCGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGCATAAATTTTGCCAGAGACGGGATGCAGGAAAAGGACTGGCTATCCTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCGTTTTATTTTGGATCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTCCCAACAATATTTGAAGTAGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGACGAGGACAAAGAAAAAGATGAGGACGAGGAAGGTTTGGAAGAGGAAGAGGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTCAAGATCACTCCGGCTCGGGCCGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGTCCGAGCGTGA 780 44.49 MDGAAPYNPRTVEEVFRDFKGRRAGLVKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGSRFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDKEKDEDEEGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRA 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32644505 32649106 - Sed0017786.1 Sed08g1789 723565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1789 259 MobiDBLite consensus disorder prediction 145 199 - -
Sed08g1789 259 ProSiteProfiles Zinc finger PHD-type profile. 203 255 IPR019787 -
Sed08g1789 259 Coils Coil 179 199 - -
Sed08g1789 259 MobiDBLite consensus disorder prediction 145 174 - -
Sed08g1789 259 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1789 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 254 IPR013083 -
Sed08g1789 259 PANTHER CPG BINDING PROTEIN 8 258 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1789 259 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Sed08g1789 259 SMART PHD_3 205 253 IPR001965 -
Sed08g1789 259 MobiDBLite consensus disorder prediction 184 199 - -
Sed08g1789 259 CDD PHD_AL_plant 205 255 IPR044104 -
Sed08g1789 259 ProSitePatterns Zinc finger PHD-type signature. 206 252 IPR019786 -
Sed08g1789 259 FunFam PHD finger alfin-like protein 198 254 - -
Sed08g1789 259 Pfam PHD-finger 206 252 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1789 Sed-Chr8:32644505 Sed09g1666 Sed-Chr9:40082862 4.80E-99 dispersed
Sed08g1789 Sed-Chr8:32644505 Sed08g1790 Sed-Chr8:32644505 3.60E-115 tandem
Sed11g0863 Sed-Chr11:20748200 Sed08g1789 Sed-Chr8:32644505 5.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39374 PF12165 Alfin 5.60E-69 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1789 K26274 - csv:101208889 454.136