Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1790 ATGGACGGAGCTGCTCCGTACAATCCCCGCACCGTGGAAGAGGTCTTTAGGGATTTCAAAGGCCGGCGAGCCGGTTTGGTGAAGGCTCTCACTACCGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGCATAAATTTTGCCAGAGACGGGATGCAGGAAAAGGACTGGCTATCCTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCGTTTTATTTTGGATCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTCCCAACAATATTTGAAGTAGTGACAGGGACAGCCAAAAAACAACGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGACGAGGACAAAGAAAAAGATGAGGACGAGGAAGGTTTGGAAGAGGAAGAGGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTCAAGATCACTCCGGCTCGGGCCGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGTCCGAGCGTGA 720 45.97 MDGAAPYNPRTVEEVFRDFKGRRAGLVKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGSRFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKTTKAVQSKDEDKEKDEDEEGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32644505 32649106 - Sed0017786.2 Sed08g1790 723566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1790 239 Pfam PHD-finger 186 232 IPR019787 -
Sed08g1790 239 Coils Coil 159 179 - -
Sed08g1790 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 234 IPR013083 -
Sed08g1790 239 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1790 239 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Sed08g1790 239 MobiDBLite consensus disorder prediction 144 179 - -
Sed08g1790 239 PANTHER CPG BINDING PROTEIN 8 238 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1790 239 MobiDBLite consensus disorder prediction 164 179 - -
Sed08g1790 239 CDD PHD_AL_plant 185 235 IPR044104 -
Sed08g1790 239 FunFam PHD finger alfin-like protein 178 234 - -
Sed08g1790 239 SMART PHD_3 185 233 IPR001965 -
Sed08g1790 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Sed08g1790 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1790 Sed-Chr8:32644505 Sed11g0863 Sed-Chr11:20748200 1.70E-114 dispersed
Sed08g1789 Sed-Chr8:32644505 Sed08g1790 Sed-Chr8:32644505 3.60E-115 tandem
Sed08g1790 Sed-Chr8:32644505 Sed08g1791 Sed-Chr8:32644505 1.00E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39375 PF12165 Alfin 4.60E-69 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1790 K26274 - csv:101208889 436.802