Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1791 ATGCTTAGGAATCGTGATTTGGCTACTGCTGTGTTCGACTTGAGAGATTATTTAATACTTCAATTTGGATGCCCGGCTTCGTTTGTATCGGTTTATTTCACTGGGTCAGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGCATAAATTTTGCCAGAGACGGGATGCAGGAAAAGGACTGGCTATCCTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCGTTTTATTTTGGATCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTCCCAACAATATTTGAAGTAGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGACGAGGACAAAGAAAAAGATGAGGACGAGGAAGGTTTGGAAGAGGAAGAGGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTCAAGATCACTCCGGCTCGGGCCGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGTCCGAGCGTGA 759 42.29 MLRNRDLATAVFDLRDYLILQFGCPASFVSVYFTGSEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGSRFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDKEKDEDEEGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRA 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32644505 32649106 - Sed0017786.3 Sed08g1791 723567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1791 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Sed08g1791 252 SMART PHD_3 198 246 IPR001965 -
Sed08g1791 252 MobiDBLite consensus disorder prediction 138 192 - -
Sed08g1791 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Sed08g1791 252 PANTHER CPG BINDING PROTEIN 36 251 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1791 252 MobiDBLite consensus disorder prediction 138 167 - -
Sed08g1791 252 Pfam Alfin 36 131 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed08g1791 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Sed08g1791 252 FunFam PHD finger alfin-like protein 191 247 - -
Sed08g1791 252 Pfam PHD-finger 199 245 IPR019787 -
Sed08g1791 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Sed08g1791 252 Coils Coil 172 192 - -
Sed08g1791 252 CDD PHD_AL_plant 198 248 IPR044104 -
Sed08g1791 252 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1791 Sed-Chr8:32644505 Sed11g0863 Sed-Chr11:20748200 2.00E-89 dispersed
Sed08g1790 Sed-Chr8:32644505 Sed08g1791 Sed-Chr8:32644505 1.00E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39376 PF12165 Alfin 2.20E-49 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1791 K26274 - csv:101208889 367.466