Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1803 ATGTATAGAGTAGCAAAAGCATCCGAGTACATAGCCATCACCGGCCTCGGAATCGACGATATTAAGCTAGCTAAGAAAGCATGGGTTTTTCCGGGCCAGTCGTGCACCATCTTCGACATCTCTCCGGTCAACTACACCTTCGAAGTTCAGGCCATGAGCGCCGAGAAGCTCCCCTTCATCCTCCCCGCTGTCTTCACCATCGGTCCCCGTTCCAACGATGACGAAAGCCTTCTCAAGTATGCCAAGCTCATCTCCCCTCACCACAAGCTCTCTAACCATGTCACGGAGCTTGTCCAGGGTGTTATCGAGGGTGAAACACGTGTTCTTGCCGCGTCTATGACCATGGAAGAGATCTTTAAGGGTACTAAAGAGTTTAAAAAGGAAGTATTTGAGAAGGTGCAATTGGAACTGAACCAATTTGGACTGTTGATATACAATGCAAATGTGAAGCAACTAGTGGATGTGGCTGGGCATGAGTACTTTTCATATTTGGGGCAGAAGACTCAGCAGGAGGCTGCCAATCAAGCCAAAATCGATGTGGCCGAGGCCCGAATGAAGGGCGAGATTGGGGCCAAATCCAGGGATGGTCAAACTCTTCAAAATGCCGCCAAGATCGACGCCGAGACGAAGATCATATCCACTCAGAGGCAGGGCCATGGGACAAAAGAGGAGATCAAGGTCAAAACCGAAGTTAAGGTGTTCGAGAATGAGCGAGAGGCCGAGGTAGCTGAGGCCAATGCCGAGCTCGCTAAGAAGAAGGCTGCCTGGACGAGGTCCGCGCAGGTTGCCGAAGTCGAGGCTGCCAAGGCTGTGGCGTTGAGAGAGGCAGAGCTGCAGAAGGAGGTTGAGATGATGAATGCATTGACTATGACTGAGAAGTTGAAGGCTGAGTTTCTCAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTACAAGAAGCAAACTGGGAATACTACAACAAGCAGAAGAAAGCAGAGGCAGTTCTGTTTGAAAAGGAGCGCGAAGCGGAAGCACAAAAGGCATTAGCCGATGCTGCATTCTACGCTCGTCAGCAAGCCGCAGATGGAGAGCTTTACGCCAAGAAGAAAGAGGCGGAGGGACTAGTGGCGATGGCAGGGGCCCAAGCCACCTACCTTCGCTCGGTTCTCGACGCATTGGGCGGTAACTATGCCGCTCTTAGAGACTATCTAATGATCAACGATGGTCTCTTCCAAGAAGTCGCCAAAATCAACGCCGAGGCCATCAAAGGCCTTCAGCCCAAAATCAGCGTATGGACTAATGACAATGCCGGGTTGGGTGTGGAAGGTGGCATTGCTGGAGCCGGGAATTCGGCCATGAAAGAGGTCGCCGGGGTTTATAAAATGCTACCGCCTTTGTTTCAGACCGTCCATGAACAAACTGGAATGGTTCCTCCGCCGTGGATGGGGAGCTTGGGCGAGTCCTCCTCTCAGAATTGA 1455 51.48 MYRVAKASEYIAITGLGIDDIKLAKKAWVFPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSNDDESLLKYAKLISPHHKLSNHVTELVQGVIEGETRVLAASMTMEEIFKGTKEFKKEVFEKVQLELNQFGLLIYNANVKQLVDVAGHEYFSYLGQKTQQEAANQAKIDVAEARMKGEIGAKSRDGQTLQNAAKIDAETKIISTQRQGHGTKEEIKVKTEVKVFENEREAEVAEANAELAKKKAAWTRSAQVAEVEAAKAVALREAELQKEVEMMNALTMTEKLKAEFLSKASVEYETKVQEANWEYYNKQKKAEAVLFEKEREAEAQKALADAAFYARQQAADGELYAKKKEAEGLVAMAGAQATYLRSVLDALGGNYAALRDYLMINDGLFQEVAKINAEAIKGLQPKISVWTNDNAGLGVEGGIAGAGNSAMKEVAGVYKMLPPLFQTVHEQTGMVPPPWMGSLGESSSQN 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32749223 32751644 - Sed0019233.1 Sed08g1803 723579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1803 484 Gene3D Band 7 domain 39 155 IPR036013 -
Sed08g1803 484 Coils Coil 235 255 - -
Sed08g1803 484 CDD SPFH_flotillin 28 175 - -
Sed08g1803 484 PANTHER FLOTILLIN-RELATED 2 476 IPR027705 GO:0005886(PANTHER)|GO:0044853(PANTHER)|GO:0072659(PANTHER)
Sed08g1803 484 Pfam SPFH domain / Band 7 family 21 183 IPR001107 -
Sed08g1803 484 SUPERFAMILY Band 7/SPFH domain 33 172 IPR036013 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1803 K07192 - - csv:101206203 764.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1386 Sed-Chr1:10288733 Sed08g1803 Sed-Chr8:32749223 5.30E-184 dispersed
Sed01g1387 Sed-Chr1:10288733 Sed08g1803 Sed-Chr8:32749223 1.90E-117 dispersed
Sed03g1626 Sed-Chr3:10356348 Sed08g1803 Sed-Chr8:32749223 2.00E-164 dispersed
Sed08g1803 Sed-Chr8:32749223 Sed03g1625 Sed-Chr3:10351651 3.20E-197 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g545 . . . . . . . . . . . . . . Sed08g1803 . . Bhi04g00024 Tan02g2740 Cmetu03g1584 . Hepe10g0237 . Lcy13g1805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003404 0 1 0 0 0 2 1 2 2 2 2 2 1 1 2 1 2 3 1 2 2 2 1 2 1 2 2 4 2 2 47