Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1811 ATGGGAGGTGGTAGGGTCGAAGTGGTGAGCAGTAGAGGCTGTTCCAGGCTGTTTTTTGGATTTTCGTCGCCATTATCGTCGTTGGGAGGTTTGCAACAGCTTGATTCCATGTCTCTGGCTTCACAGTCTTCAAGGTCCGAGTCGGTTAAAGCTCGGTTAATTGGTCCCTTTACTGGACTTGTAATTTGCGTTACTGGGTTGTCTAAAGAAGCAAGGAAACAAGTTAAAGAAGCTTCGGAGAGATTAGGTGGACACTACAGCCCCAATTTGCATCCACAATGTACCCATTTGGTGGTTCAAAGCTTAGGTGGACGCAAATTCGAGCATGCCCTTAAGCATGGTTCAAGAAATGGGCTCTATGTTGTCGCTCTTGGCTGGTTTGTGGATAGTGTACGGAGAAATGTAAGACTGAGCGAGTCTCTTTATAATATCAAGAGTCTTGGAGACAGTAGTGAACGCCTCGATGAATTGAACCAACTAGTAGGATCCAGTGGTGATGGAAACTCTTGCCTTCCCGTGGGCATTCATGGAGTTGAGCAAAATGATATGAAAGGAGAATCTCATTTACCATTCTCTAAAGGAGATCGCGATAGAAGAATGGACTCTAATCTCTCTGGTCAATCTATGTATATTGATACGGACATTTCATCAGAGCTGCGACTTAAGGTTATTGAGGCTGCTAAGGGAGTTGGCGCCTCAGTTGTGGATCAATGGTTTGCTGGTTGCAGCACAAGTCACGTGGTTTGTGAAAGGACTTCCATCAATCGATATCTTGGCCACTCCAGCAATTTAGTTACACCACTCTGGGTTCTGAAAACGGTGAAGGAAAAACGTGCACAAAGACTTATTCACATGTCTGCTGACTTGGCTCGACAGATTAGTTCAACACTCGAAGATCTTTGTGCTGAAAATTCTTCGGAGGCAATGAATCAGCAAGCAAAAGATGCTAGTAATTTTAGAAGCAACGCAACCCAGGAAGAACGCGAGCAAATTATTTCAAATGCTAAACTTGGGGTGAGAAAACGCCGTGATTGTCGAATGCAGACGTGTCAAACCCCAATACGTCCATTAACCCCAAGTAGCCTTTTGGATTCAATCTGCTGGTCAATATCTGAGCCGAGTTCATCTGCTTCAATTTACACAGACTCTGTCAGTAGTGAAGGTGTCAATGAGCATCGTACTCCAGAGTTCTTTGATGCAACAGGAGATGGCAAGGAATCAGAAGCTTCATTTGCAAACTTAACTCGCCCACTCAATGAAAGGTTGGATCACTTAGATGGTTCACAACCGATGCATTTGATTGTTTACCTCATCACAATTCATGTGGAACTTGTAAGCTCGAGTAATGTCGAACTCGGACAGCAACTGCATTGTTTTTCATTTTTCATTTTCATTTGCAGTGAGAAATCTGAAGTCGTATTCAAAAACCATTACTTGACCATACTATTTCCAGTGGATCGTTTCTTTGAAATGGGTCCATCTTCAAGGACGTTTTTTAGCAACAATGGATTCACGTGTTTGCGGATTCTGGATCATATTTATGCATTTTATCAGGAGAACATGTCAGATCATGAAATAGAGATGGCAATACACACTGACTCAAGGCACGCTGACCGACTTCGATCGGTTTACTGCAGTAAAGAAACAATAGATTCTGGGTATACAGCTTTCAAAAGGATCGAATTCTTGGGGAGTTGTAGAGGTTTTGAAAAGTTGAAGCGTGTTAGTGTCGATAACAATAGTAACGTCTACGAGTTATTGATAAGAGCATGA 1773 42.81 MGGGRVEVVSSRGCSRLFFGFSSPLSSLGGLQQLDSMSLASQSSRSESVKARLIGPFTGLVICVTGLSKEARKQVKEASERLGGHYSPNLHPQCTHLVVQSLGGRKFEHALKHGSRNGLYVVALGWFVDSVRRNVRLSESLYNIKSLGDSSERLDELNQLVGSSGDGNSCLPVGIHGVEQNDMKGESHLPFSKGDRDRRMDSNLSGQSMYIDTDISSELRLKVIEAAKGVGASVVDQWFAGCSTSHVVCERTSINRYLGHSSNLVTPLWVLKTVKEKRAQRLIHMSADLARQISSTLEDLCAENSSEAMNQQAKDASNFRSNATQEEREQIISNAKLGVRKRRDCRMQTCQTPIRPLTPSSLLDSICWSISEPSSSASIYTDSVSSEGVNEHRTPEFFDATGDGKESEASFANLTRPLNERLDHLDGSQPMHLIVYLITIHVELVSSSNVELGQQLHCFSFFIFICSEKSEVVFKNHYLTILFPVDRFFEMGPSSRTFFSNNGFTCLRILDHIYAFYQENMSDHEIEMAIHTDSRHADRLRSVYCSKETIDSGYTAFKRIEFLGSCRGFEKLKRVSVDNNSNVYELLIRA 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32857740 32862775 - Sed0007384.2 Sed08g1811 723587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1811 590 Gene3D BRCT domain 55 146 IPR036420 -
Sed08g1811 590 ProSiteProfiles BRCT domain profile. 199 278 IPR001357 -
Sed08g1811 590 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 421 - -
Sed08g1811 590 SUPERFAMILY BRCT domain 204 280 IPR036420 -
Sed08g1811 590 SUPERFAMILY BRCT domain 54 144 IPR036420 -
Sed08g1811 590 Pfam twin BRCT domain 60 114 IPR001357 -
Sed08g1811 590 SMART BRCT_7 54 134 IPR001357 -
Sed08g1811 590 SMART BRCT_7 201 277 IPR001357 -
Sed08g1811 590 CDD BRCT_TopBP1_rpt2_like 55 134 - -
Sed08g1811 590 ProSiteProfiles BRCT domain profile. 52 144 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1811 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1810 Sed-Chr8:32857740 Sed08g1811 Sed-Chr8:32857740 5.70E-304 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36