Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1827 ATGCAAGGTGGATCATCAGGCATTGGCTACGGCCTCAAATACCAGGCTCGATGCATCGCCGATGTCAAAGCCGATACAGATCACACCAGTTTCATCACCGGCACTCTCAGCCTCAAAGACGAAAACGAGGTGCATTTGATTCGGCTTTCGTCGAGTGGATCTGAGCTCATATGCGAGGGTTTGTTTTCTCACCCCAATGAGATCTGGGACCTCGCGTCTTGCCCGTTTGATCAACGCATTTTCTCTACCGTCTTCTCCACTGGTGAAAACTTTGGGGCAGCAATATGGCAAATCCCGGAGTTATATGGTGAATTGAATTCTCCTCAGCTGGAAAAGATTACTTCACTTGATGAACATGCTAGTAAGATCAACTGCGTTCTCTGGTGGCCATCTGAAAGACATGATAAGCTGATCAGCATAGATGAGGAAAGTATTTTGTTATGGAGCTTGGATTGTTCGAGAAAATTTGCTCAGGTTCACTCAAAGGAGTCAGCTGGGATGCTTCATTATTTATCTGGAGGGACGTGGGATCCACATGATTCAAATGCTATTGCAGCAACTAGTGAATCATCCGTTCAGTTTTGGGATTTAAGGACAATGAAGAAGACAGACTCAATTGCATGCTCTTCATATGTTCGCAATGTGGATTACAACCCCAAGAGGAAGCATTTACTTGTAACTGCTGAGGATGAAACTGGAATATCTATCTGGGACCTTAGGAAGACAAAGGTCCCAATCCAACAACTTCCTGGACACACCCACTGGACATGTGCTGTTCATTGTAATCCCGAGTATGATGGGCTAATATTGAGTGCTGGTACTGATTCAGCTGTCAACTTATGGATGGCATCCGTGTCTGAGGGTGAACGGAAATCGGAAAGGACGGTTGATTCACAACCATTATTGCAATCTTACAGCGACTACGAAGACAGTGTTTATGGCATTGCTTGGAGCTATCGTGAGCCTTGGATCTTTGCTTCATTGTCCTATGATGGGAGGGTTGTTGTAGAATCAGTGAAGCCTCTTCTCTCGAGATAA 1038 45.18 MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLEKITSLDEHASKINCVLWWPSERHDKLISIDEESILLWSLDCSRKFAQVHSKESAGMLHYLSGGTWDPHDSNAIAATSESSVQFWDLRTMKKTDSIACSSYVRNVDYNPKRKHLLVTAEDETGISIWDLRKTKVPIQQLPGHTHWTCAVHCNPEYDGLILSAGTDSAVNLWMASVSEGERKSERTVDSQPLLQSYSDYEDSVYGIAWSYREPWIFASLSYDGRVVVESVKPLLSR 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33034883 33045340 + Sed0022458.1 Sed08g1827 723603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1827 345 PANTHER WD-REPEAT PROTEIN 1 343 IPR040323 GO:0016567(PANTHER)
Sed08g1827 345 FunFam WD repeat-containing protein DWA2 14 342 - -
Sed08g1827 345 Pfam WD domain, G-beta repeat 245 281 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 Pfam WD domain, G-beta repeat 301 336 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 199 238 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 55 97 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 298 338 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 109 149 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 161 196 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SMART WD40_4 242 282 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 Gene3D - 14 343 IPR015943 GO:0005515(InterPro)
Sed08g1827 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 281 IPR001680 GO:0005515(InterPro)
Sed08g1827 345 SUPERFAMILY WD40 repeat-like 19 336 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1827 K23289 - - csv:101214013 658.677
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g118 . . . . . . . . Cmo05g01007 Cmo12g00610 . . . Car12g00652 Sed08g1827 . . Bhi04g01562 Tan02g1534 Cmetu03g1317 . Hepe08g1487 . Lcy13g2251 Cla08g00960 . . . . . . . . Cone17ag1444 Cone20ag0033 . . . Cme03g01354 . Blo18g00750 . Bda01g01558 Bpe02g01753 . Bma01g00705 . . . . Cma12g00672 Cma05g00989 Car05g00870 . Cpe11g00798 . . . . . . . . . . . . . . . Lsi08g00800 . Chy03g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006013 1 1 1 1 1 1 3 1 1 1 2 1 2 1 1 3 1 2 1 1 1 1 2 1 1 2 1 1 1 1 39