Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1842 ATGAGTTGCTTTTCTTGTATTAATCCTCGCACGAAAGATGGGAGCAAGGTCGAGATCGACAATGGACGCCGTTCTGTTCAAACCTCAGGTACGGGTAGGGGAAAAGAAGCTTTGTGCAACAGCGATAGCCATCCGAAGGGGACCGCTGCTGCTCGCAGCTTCACGTTCCGTGAACTCGCCACGGCCACGAGAGGTTTCAAGGAAGTGAATTTGATTGGAGAGGGTGGTTTTGGTCGTGTCTATAAAGGACGTTTGGATACAGAACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAGGAATTCGTTGTGGAGGTTCTTATGTTGAGTCTGTTGCACCATCCCAATCTTGTCACCTTGATTGGTTACTGTACTAATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCTTGGAAGATCATCTTTTTTGTTCGGGTACTGACAAAGAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAGTTGGTGCTGCCCGAGGACTTGAGTATCTCCACTGTAAAGCAAATCCACCAGTCATATACCGTGACTTGAAATCTGCTAATATCTTATTGGATAATGACTTTAATCCAAAGCTTTCAGATTTTGGACTGGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACCAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGCAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACAGGGCGGAAGGCCATTGATACTACAAGGAAACCAGGGGAGCAGAACCTAGTTTCTTGGTCCCATCCTTTACTGAGGGACCGCAGAAAGTCCATGCAATTAGTCGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCACCACGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAGCCGTCCTTTCGTCCTCTTATTAGCGATATTGTTGTAGCACTCGAATATTTGTCCTCTAAGAGTTATTTACAAGAACTGCCAAATGGAAAGACTCACAGTTCATCACCACAATCATCACTTACACAGCAGAGCGGATATAGCGATCGGTGA 1125 45.07 MSCFSCINPRTKDGSKVEIDNGRRSVQTSGTGRGKEALCNSDSHPKGTAAARSFTFRELATATRGFKEVNLIGEGGFGRVYKGRLDTEQIVAVKQLNRDGLQGFQEFVVEVLMLSLLHHPNLVTLIGYCTNGDQRLLVYEYMPMGSLEDHLFCSGTDKEPLSWNTRIKIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDTTRKPGEQNLVSWSHPLLRDRRKSMQLVDPLLEGHFPLRCLHHAVAITAMCLQEQPSFRPLISDIVVALEYLSSKSYLQELPNGKTHSSSPQSSLTQQSGYSDR 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33113909 33118058 - Sed0008602.2 Sed08g1842 723618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1842 374 Gene3D Transferase(Phosphotransferase) domain 1 142 359 - -
Sed08g1842 374 MobiDBLite consensus disorder prediction 22 36 - -
Sed08g1842 374 ProSiteProfiles Protein kinase domain profile. 66 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1842 374 MobiDBLite consensus disorder prediction 22 48 - -
Sed08g1842 374 MobiDBLite consensus disorder prediction 351 374 - -
Sed08g1842 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1842 374 CDD STKc_IRAK 72 340 - -
Sed08g1842 374 FunFam Serine/threonine-protein kinase PBS1 142 358 - -
Sed08g1842 374 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Sed08g1842 374 SUPERFAMILY Protein kinase-like (PK-like) 47 340 IPR011009 -
Sed08g1842 374 FunFam probable serine/threonine-protein kinase RLCKVII 39 141 - -
Sed08g1842 374 Pfam Protein kinase domain 67 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1842 374 PANTHER OS07G0668900 PROTEIN 40 363 - -
Sed08g1842 374 SMART serkin_6 66 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1842 374 PIRSF ILK 22 351 - -
Sed08g1842 374 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1842 Sed-Chr8:33113909 Sed12g0854 Sed-Chr12:5311168 1.50E-130 dispersed
Sed08g1841 Sed-Chr8:33113909 Sed08g1842 Sed-Chr8:33113909 3.00E-219 tandem
Sed08g1842 Sed-Chr8:33113909 Sed08g1843 Sed-Chr8:33113909 3.00E-219 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79653 PF00069 Pkinase 2.90E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1842 - - - 0.0