Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1848 ATGGCTTTCTGGTTTTTTATTTCTCATCTCTTATCTACTTCACTCCCCACTGTAAATTTCCAGCTGCAAATCCTCCATCTCAGAATCATGGATTCCATATTCTCAACCACTACACTCTCTTCTGTAATGGCGAAAGCAAATGGCGGAATTCGCTGCCAGTTTACGATGCCTCATTCCAAGAACAACTCCAGAAAACCACCGCCAAAAAACCTCCTATATCCTCGCCGGACCAAGCTTCCTTCCGATCCCGGCGTCAATCAGTTCCTGAAGAAAACAATCTCGAACCCTAACCCTAACCCTAGCCCTTTTTTCTCCGATTTGATTTCCACCGAATTTCCCGAAGAAGACGATGTTCTTGAAGAATCCGCTGTCGATGATGGCAAGGGAAGTGAAGTTGTTTGGGATTCAGAAGAAATCGAAGCGATTACATCGCTTTTCCAAGGGAGAATTCCACAAAAACCTGGGAAATTAAACCGGGAGAGACCTCTTCCGCTTCCATTGCCTCACAAGCTACGACCACCAGGACTTCCCAACCCTAAAATCCGCTCAAGAACAGGCGCTTCTTCGCGTGTGTTGATGTCTAAGCAAATCTACAAGTGCCCTAGTTTTCTTACTGGCCTTGCCCGAGCGATTAGGGATCTGCCTCCGGAGAAAAACGTGTCTGAAGTTCTTAACAGATGGGCTCCGTTTTTGCAGAAGGGGTCTCTTTCTTTGACGATTAGGGAACTGGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGCTCAAGAACAGCCTAGACTCTTTCCTGATGATCGTGTTTTGGCCTCCACGGTTGAGGTTCTTGCAAGGAACCATGAACTTAAAGTACCTTTCAACTTGGATGAGTTCACTAGAGTTCCGGGTCGAGGCGTGCTCGAGGCAATGGTGAGAGGGTTTATCAGGGGTGGGAGGTTAAACCTTGCTTGGAAGATTCTTATAGCTGCTAAGAATAGTAACAGATTGTTGGATCCCAGTGTTTATGTGAAGTTGATATTGGAGTTGGGGAACAACCCTGATAAAAACATGTTGGTACTTACCTTACTGGATGAGTTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACGTCAGCTATCATGAAGGTTAGCACAAGGCTTGGTAAATTTGAAATTACTGAGAGACTTTTTAGTTGGTATGTTGAATCCGGGCATGAAGCTAGTGTCGTTATGTACACTGCTTTAGTTCATAATCGCTATTCGGAGAGGAAGTATAGGGAAGCATTATCTGTAGTTTGGGAAATGGAGGCTGCAAACTGTATTTTTGATCTTCCTGCTTATAGTGTTGTGATGAAGCTTTTTGTTGCTCTTGGTGATCTTTCCAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTGCCCCTACTTATGGCATTTATAGGAATTTGATTACCATTTATTTAGTTTCAGGGAGGTTGGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCCGGGTTTATCATGGACAAACAAATTACTTCAATGTTGTTGCAAGCAAAAAGATGA 1572 43.83 MAFWFFISHLLSTSLPTVNFQLQILHLRIMDSIFSTTTLSSVMAKANGGIRCQFTMPHSKNNSRKPPPKNLLYPRRTKLPSDPGVNQFLKKTISNPNPNPSPFFSDLISTEFPEEDDVLEESAVDDGKGSEVVWDSEEIEAITSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRSRTGASSRVLMSKQIYKCPSFLTGLARAIRDLPPEKNVSEVLNRWAPFLQKGSLSLTIRELGHMGLADRALKTFCWAQEQPRLFPDDRVLASTVEVLARNHELKVPFNLDEFTRVPGRGVLEAMVRGFIRGGRLNLAWKILIAAKNSNRLLDPSVYVKLILELGNNPDKNMLVLTLLDELGQREALNLNQQDTSAIMKVSTRLGKFEITERLFSWYVESGHEASVVMYTALVHNRYSERKYREALSVVWEMEAANCIFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFAPTYGIYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33154812 33158903 - Sed0018053.2 Sed08g1848 723624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1848 523 MobiDBLite consensus disorder prediction 151 184 - -
Sed08g1848 523 Gene3D Tetratricopeptide repeat domain 204 351 IPR011990 GO:0005515(InterPro)
Sed08g1848 523 PANTHER YALI0C12947P 62 522 - -
Sed08g1848 523 Gene3D Tetratricopeptide repeat domain 352 523 IPR011990 GO:0005515(InterPro)
Sed08g1848 523 Pfam PPR repeat 480 508 IPR002885 -
Sed08g1848 523 Pfam Pentatricopeptide repeat domain 399 453 IPR002885 -
Sed08g1848 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Sed08g1848 523 MobiDBLite consensus disorder prediction 55 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1848 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1848 Sed-Chr8:33154812 Sed08g1850 Sed-Chr8:33154812 4.30E-216 dispersed
Sed08g1847 Sed-Chr8:33154812 Sed08g1848 Sed-Chr8:33154812 4.80E-300 tandem
Sed08g1848 Sed-Chr8:33154812 Sed08g1849 Sed-Chr8:33154812 4.30E-216 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005177 0 2 1 1 1 3 1 1 2 1 2 2 1 1 1 1 2 1 1 3 1 1 1 1 1 1 0 5 1 0 40