Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1852 ATGGCGGAGAGTTGGGATGGGAGTTATGATGATTCCGGAAGTGTGTCCGATGAGAGCAGTTACTTTTCCCGGCTGCATATTGAGCCGATTTATGATTCCTTTGTGTGTCCTTTGACCAAGCAAGTGATGCGGGACCCTGTTACCATTGAGAGTAGCCAGACGTTTGAGCGTGCCGCCATTGAGAAATGGTTCAAGGAGTGTAGGGAGAGTCGGAGGAAGCCAATCTGTCCAATGACACTGAAGGAATTACGAACCACGGATCTGAATCCGAGTATTGCGTTGCGGGATACGATCGAAGAATGGACTGCTAGGAATGCAGCTGTTCAGCTCGATATGGCTCGTAAGTCGCTTAACTTGGGAGGCCCTGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTTTGCCAAAAGGGTTTGTCGAGGCATATCGCGCGAAATGCGGGGCTTATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTCCAGTTTAGAGCTTTGGAAACCCTTCGGATTGTGGTGCAAGAAGACAATGACTGTAAGGAAATGTTAGCTGAGGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGCCATGAGCGTTCGAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCGGAAGCCTTGTGTGAAAAGATCGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGCAGCAAATCTGAGAACATCACCACAATCGAAAATGCCGAAAAAACATTAGAGAACCTGGAGAAGTGTGAGAATAATATTCGACAAATGGCTGAATTTGGTAGACTGAGGCCTCTTCTAACACAAATTCTTCAAGGTGAGTACATGATCTTCAGTAGTGGATTTATTAGTAGTTTTCATTTGATATTTGTGCTTCTTTCGGAAAAAAGTGAGGAAGCAGGCATATCACATCACTGTTCGTATGCAGGAGAAGGTTAA 987 44.68 MAESWDGSYDDSGSVSDESSYFSRLHIEPIYDSFVCPLTKQVMRDPVTIESSQTFERAAIEKWFKECRESRRKPICPMTLKELRTTDLNPSIALRDTIEEWTARNAAVQLDMARKSLNLGGPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLRIVVQEDNDCKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEKIGSVNGAILILVGMSSSKSENITTIENAEKTLENLEKCENNIRQMAEFGRLRPLLTQILQGEYMIFSSGFISSFHLIFVLLSEKSEEAGISHHCSYAGEG 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33161824 33162900 + Sed0012215.1 Sed08g1852 723628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1852 328 Coils Coil 253 273 - -
Sed08g1852 328 SUPERFAMILY ARM repeat 122 286 IPR016024 -
Sed08g1852 328 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 292 IPR052608 -
Sed08g1852 328 SMART arm_5 181 221 IPR000225 GO:0005515(InterPro)
Sed08g1852 328 SMART arm_5 139 179 IPR000225 GO:0005515(InterPro)
Sed08g1852 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Sed08g1852 328 CDD RING-Ubox_PUB 31 88 IPR045210 -
Sed08g1852 328 SMART Ubox_2 33 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g1852 328 Pfam U-box domain 32 105 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g1852 328 SUPERFAMILY RING/U-box 20 110 - -
Sed08g1852 328 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g1852 328 Gene3D - 114 316 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1852 Sed-Chr8:33161824 Sed01g1077 Sed-Chr1:8109319 3.90E-13 dispersed
Sed08g1852 Sed-Chr8:33161824 Sed08g2733 Sed-Chr8:39121108 1.20E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1852 - - - 0.0