Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1853 ATGGTGTACAAAAAAATTAAGGTAATTCAACAATTCTTGGAAACGGGTGTGGATTTAGAACTGAAAGGTAGAGGTGGAAGCCCACCAGAAACTAAACATGTCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGACGTAAAAATCTTCGTTGCTCAAACTGTGGGGTCTTCTCTAATTAATATCATGAAAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAACAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCTTCTTTTGAGGCTAGTGCAAGAATTTTGGTTCAGGAAGGGATACTTCCACCTCTAGTTAAGGATCTTTTCACAGTTGGTTCGCTTCCCATTCGGTTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTGGTGAGCTCAGGCTGTGATTTTGAATCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACAGTCCATAACCTGCTACAACTGATTAGCAATAACGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCCCCAGAAACTGTTTTGAGTATTGTCAATGCCATTCGAAGCTCTGGTGCAATTATCAGCCTGGTTCAATTTATCGAGGCCCCACAACTGGAGTTGCGTGTTTCTGCTATAAAGCTCCTCCGGAACATCTCCCTACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGCTCGGTTGGACAGCTGAACAGTTTATTTAGAATCATTGAAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTTCCTGAAAGGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAAAGGCTTTTGAGTTGGTCTTATCTAGAATTGTTGAACTCCGCCAAGGAGAAACTCGGGGCGGCCGATATTTAACACCATTCCTTGAAGGCCTTGTTAAAATTCTTTCGAGGATTACATTCATATTGGCCGGTGAGCCTGATGCTCTTGCATTTTGTCGCCGCAACAATCTCGCTGCTTTATTCATCAATCTGCTTCAGTCTAATGGGCTTGATAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTCTAGAATCCAAAAGCTTGTCTCAGCTACCTTCTCTTCCAGAACCTGGGTTTTGTGCCTCTATTTTTCCATGCTTCAGCAGACAACCAGTACTAACCGGGTTGTGTCCTCTCCACCGGGGCACGTGTTCTTTGAGTGAAAGTTTTTGTCTTTTGGAAGGTCAGGCAGTGACTAGATTGGTAGCCCTTTTAGATCATGGAAGTGTGAAGGTCGTCGAGGCAGCGCTTGCGGCACTATCTACTGTGCTGGATGATGGAGTTGATGTTGCGCAGGGGGTGAACATTTTGCACGACGCAGGTGCAGTTCAGCCTATATTTACGGTGTTGCTTGAAAACAGATCAGAGAATCTGATGAGAAGGGCTGTTTGGACAGTTGAGAGGCTGTTGCGTATGGAGGATATCGCTATTGAATTCTCAAATAACCCAAATGTGAATACGGCACTTGTTGATGCCTTCCAGCATGGTGACTACCAAACCAGGCAGATCGCCGAGCGGGCTTTAAGACATGTCGATAAGTTACCCAACTTCTCCAATATATTTCCAAATCCTAATCATATGGGATAA 1683 43.85 MVYKKIKVIQQFLETGVDLELKGRGGSPPETKHVMAAHLGELVLNNDVKIFVAQTVGSSLINIMKSGDKQSKEAALKTKEAALKALNQISSFEASARILVQEGILPPLVKDLFTVGSLPIRLKEVSATILANVVSSGCDFESIPVEPNNQTTLVSEDTVHNLLQLISNNGPAIECKLLQVLVGLTSSPETVLSIVNAIRSSGAIISLVQFIEAPQLELRVSAIKLLRNISLHLSQELADALRGSVGQLNSLFRIIEENTGITEEQAAAVGLLADLPERDLGLSRQMLDEKAFELVLSRIVELRQGETRGGRYLTPFLEGLVKILSRITFILAGEPDALAFCRRNNLAALFINLLQSNGLDNVQMVSAMALENLSLESKSLSQLPSLPEPGFCASIFPCFSRQPVLTGLCPLHRGTCSLSESFCLLEGQAVTRLVALLDHGSVKVVEAALAALSTVLDDGVDVAQGVNILHDAGAVQPIFTVLLENRSENLMRRAVWTVERLLRMEDIAIEFSNNPNVNTALVDAFQHGDYQTRQIAERALRHVDKLPNFSNIFPNPNHMG 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33172500 33174595 + Sed0009257.1 Sed08g1853 723629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1853 560 Coils Coil 69 89 - -
Sed08g1853 560 Gene3D - 9 308 IPR011989 -
Sed08g1853 560 SUPERFAMILY ARM repeat 32 543 IPR016024 -
Sed08g1853 560 SMART arm_5 334 375 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 SMART arm_5 416 457 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 SMART arm_5 461 503 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 SMART arm_5 92 135 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 SMART arm_5 45 91 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 SMART arm_5 190 231 IPR000225 GO:0005515(InterPro)
Sed08g1853 560 Gene3D - 315 551 IPR011989 -
Sed08g1853 560 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 553 IPR052608 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1813 Sed-Chr6:42641785 Sed08g1853 Sed-Chr8:33172500 1.50E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1853 - - - 0.0