Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1867 ATGTCGGGATCTGAGACTGGGATGATGTCGAGTAGAGAGCCCTTCAATGTCGGTGTCCCGAATAGCACTATGCAGTCGCAGGCGGCGGCTCAAAGTATGCGATTAAGCTTTGGCGCCGGTGCCGATTACAAGCCTGTAACTGCTTCAACCTCACCGTCCTACCAGCCTACCATGGCTGGAGTTTCTGGTAATCCCGGAATCGAGGGATCGGCGGGTGGGGGATCTATGTTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGTGAGCAGATAAAGAAGAAGAGGGGCAGGCCGAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTAGGTTCGGGGCCGCAATCGGGAAGTGGAGGGTTTTCTCCAACTATGGCTAATCCTGCTTCAGATGGATTGGCTTCACCAAATTCATTGAAGAAAGCTAAAGGCAGGCCGCTTGGTTCTGGTTCTAAGAAAAAGCAGCAATTGGAAGCTTTGGAGCTATTAATTGCAGGGTCAGCTGGTATTGGATTCACTCCACATGTTATCAATGTGAAAACTGGAGAGGATGTATCGGCAAAAATAATGTCCTTTTCTCAGAATGGCCCCCGAGCCATTTGTATACTCTCTGCAAATGGTGCAATATCAAATGTGACTTTACGTCAATCTGCTACATCTGGTGGGACTGTTACTTATGAGGGGCGATTTGAAATTTTGTCACTTTCGGGTTCATTTCTGCTGTCTGATAATGGCGGTCAGAGAAGCAGAACTGGTGGTTTGAGTGTGTCTTTGTCCGGTCCAGATGGGCGAGTTTTAGGTGGTGGTGTTGCGGGTCTTCTCACAGCTGCATCTCCTGTTCAGGTAGTTGTGGGAAGCTTCATAGCCGACAGCAACAAGGAGCCAACATCAGCCCGCCAAATGGAACCCGTCTCTGCCTCGCAAATGCCAAACCCAGTTGGCTTTGGTCACTTAACAGGAGGAGCCAGTAGTCCATCTCATGGGACGCTGAGCGAGTCTTCTGATGACGGCCCCGGCAGCCCCCTCAACTACTCTGGAGCTTGTAACAACAACAACAACAATCATCCTCATGGCATGTCTGGCATGCCATGGAAGTAA 1101 50.05 MSGSETGMMSSREPFNVGVPNSTMQSQAAAQSMRLSFGAGADYKPVTASTSPSYQPTMAGVSGNPGIEGSAGGGSMLPHGFNINSVGSEQIKKKRGRPRKYGPDGSMALALGSGPQSGSGGFSPTMANPASDGLASPNSLKKAKGRPLGSGSKKKQQLEALELLIAGSAGIGFTPHVINVKTGEDVSAKIMSFSQNGPRAICILSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFLLSDNGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADSNKEPTSARQMEPVSASQMPNPVGFGHLTGGASSPSHGTLSESSDDGPGSPLNYSGACNNNNNNHPHGMSGMPWK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33239738 33243569 - Sed0003892.2 Sed08g1867 723643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1867 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 342 IPR039605 GO:0003680(InterPro)
Sed08g1867 366 MobiDBLite consensus disorder prediction 323 359 - -
Sed08g1867 366 ProSiteProfiles PPC domain profile profile. 169 309 IPR005175 -
Sed08g1867 366 MobiDBLite consensus disorder prediction 63 153 - -
Sed08g1867 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 175 289 IPR005175 -
Sed08g1867 366 CDD DUF296 174 288 IPR005175 -
Sed08g1867 366 MobiDBLite consensus disorder prediction 294 366 - -
Sed08g1867 366 Gene3D - 175 309 - -
Sed08g1867 366 MobiDBLite consensus disorder prediction 294 308 - -
Sed08g1867 366 MobiDBLite consensus disorder prediction 112 135 - -
Sed08g1867 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 173 290 - -
Sed08g1867 366 FunFam AT-hook motif nuclear-localized protein 1-like 175 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1867 Sed-Chr8:33239738 Sed13g1199 Sed-Chr13:17102459 5.40E-88 dispersed
Sed08g1866 Sed-Chr8:33239738 Sed08g1867 Sed-Chr8:33239738 6.90E-197 tandem
Sed08g1867 Sed-Chr8:33239738 Sed08g1868 Sed-Chr8:33239738 2.40E-197 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1867 - - - 0.0