Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1868 ATGTCGGGATCTGAGACTGGGATGATGTCGAGTAGAGAGCCCTTCAATGTCGGTGTCCCGAATAGCACTATGCAGTCGCAGGCGGCGGCTCAAAGTATGCGATTAAGCTTTGGCGCCGGTGCCGATTACAAGCCTGTAACTGCTTCAACCTCACCGTCCTACCAGCCTACCATGGCTGGAGTTTCTGGTAATCCCGGAATCGAGGGATCGGCGGGTGGGGGATCTATGTTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGTGAGCAGATAAAGAAGAAGAGGGGCAGGCCGAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTAGGTTCGGGGCCGCAATCGGGAAGTGGAGGGTTTTCTCCAACTATGGCTAATCCTGCTTCAGATGGATTGGCTTCACCAAATTCATTGAAGAAAGCTAAAGGCAGGCCGCTTGGTTCTGGTTCTAAGAAAAAGCAGCAATTGGAAGCTTTGGGGTCAGCTGGTATTGGATTCACTCCACATGTTATCAATGTGAAAACTGGAGAGGATGTATCGGCAAAAATAATGTCCTTTTCTCAGAATGGCCCCCGAGCCATTTGTATACTCTCTGCAAATGGTGCAATATCAAATGTGACTTTACGTCAATCTGCTACATCTGGTGGGACTGTTACTTATGAGGGGCGATTTGAAATTTTGTCACTTTCGGGTTCATTTCTGCTGTCTGATAATGGCGGTCAGAGAAGCAGAACTGGTGGTTTGAGTGTGTCTTTGTCCGGTCCAGATGGGCGAGTTTTAGGTGGTGGTGTTGCGGGTCTTCTCACAGCTGCATCTCCTGTTCAGGTAGTTGTGGGAAGCTTCATAGCCGACAGCAACAAGGAGCCAACATCAGCCCGCCAAATGGAACCCGTCTCTGCCTCGCAAATGCCAAACCCAGTTGGCTTTGGTCACTTAACAGGAGGAGCCAGTAGTCCATCTCATGGGACGCTGAGCGAGTCTTCTGATGACGGCCCCGGCAGCCCCCTCAACTACTCTGGAGCTTGTAACAACAACAACAACAATCATCCTCATGGCATGTCTGGCATGCCATGGAAGTAA 1086 50.28 MSGSETGMMSSREPFNVGVPNSTMQSQAAAQSMRLSFGAGADYKPVTASTSPSYQPTMAGVSGNPGIEGSAGGGSMLPHGFNINSVGSEQIKKKRGRPRKYGPDGSMALALGSGPQSGSGGFSPTMANPASDGLASPNSLKKAKGRPLGSGSKKKQQLEALGSAGIGFTPHVINVKTGEDVSAKIMSFSQNGPRAICILSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFLLSDNGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADSNKEPTSARQMEPVSASQMPNPVGFGHLTGGASSPSHGTLSESSDDGPGSPLNYSGACNNNNNNHPHGMSGMPWK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33239738 33243569 - Sed0003892.3 Sed08g1868 723644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1868 361 Gene3D - 170 304 - -
Sed08g1868 361 MobiDBLite consensus disorder prediction 289 303 - -
Sed08g1868 361 FunFam AT-hook motif nuclear-localized protein 1-like 170 300 - -
Sed08g1868 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 285 - -
Sed08g1868 361 MobiDBLite consensus disorder prediction 318 354 - -
Sed08g1868 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 284 IPR005175 -
Sed08g1868 361 MobiDBLite consensus disorder prediction 112 135 - -
Sed08g1868 361 CDD DUF296 169 283 IPR005175 -
Sed08g1868 361 ProSiteProfiles PPC domain profile profile. 164 304 IPR005175 -
Sed08g1868 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 337 IPR039605 GO:0003680(InterPro)
Sed08g1868 361 MobiDBLite consensus disorder prediction 289 361 - -
Sed08g1868 361 MobiDBLite consensus disorder prediction 62 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1866 Sed-Chr8:33239738 Sed08g1868 Sed-Chr8:33239738 9.70E-199 dispersed
Sed08g1868 Sed-Chr8:33239738 Sed13g1199 Sed-Chr13:17102459 2.10E-89 dispersed
Sed08g1867 Sed-Chr8:33239738 Sed08g1868 Sed-Chr8:33239738 2.40E-197 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1868 - - - 0.0