Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1872 ATGGCTTATCCTGGTCCTGTATCCGGATCAAGTTCGACTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACCACCTACACCAAGGTCTTCGTTGGTGGCTTGGCCTGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAACAGTTTGGGGACATTCTTGAGGCTGTTGTCATCACGGATAAGAATACGGGGAGATCCAAAGGATATGGTTTTGTGACTTTTCGAGATCCGGAGTCTGCTCGAAGAGCTTGCGCCGATCCTACTCCTATTATTGATGGCAGGCGAGCGAATTGTAATCTGGCTTCACTTGGCCGGCCGAGGCCGCCTATATCTTATGGACGTTCGAGACCGCCTGCACTCTATGTTGGAGCTGGAGGCATGCAACCCAATAGAGGAACTTATATTGGAAATCTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATTCTTCTTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATCTATGGGGCGCCTGGGTCAGCGAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGCGCTGTTCATGGATATGCAATGCCAAGTCCTCAGATTGTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACACTTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTACAGCACAGCCACAGTTCGTTGTTCATTCTCCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAGCATCTGGATGA 843 48.4 MAYPGPVSGSSSTSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRSRPPALYVGAGGMQPNRGTYIGNLGYQQPVSYAYQQGLAYPPYGYSSYGPEYVYPQGGYNPFVGQQYLQIYGAPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFSGPNVNALTSSPMPTLQAPYPSGIPAPVTAQPQFVVHSPQFVQGSGSDQASG 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33260278 33268491 - Sed0009990.1 Sed08g1872 723648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1872 280 PANTHER BOULE-RELATED 14 275 - -
Sed08g1872 280 Gene3D - 10 117 IPR012677 -
Sed08g1872 280 Pfam RNA recognition motif 29 85 IPR000504 GO:0003723(InterPro)
Sed08g1872 280 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 108 - -
Sed08g1872 280 SUPERFAMILY RNA-binding domain, RBD 26 143 IPR035979 GO:0003676(InterPro)
Sed08g1872 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723(InterPro)
Sed08g1872 280 CDD RRM_RBM24_RBM38_like 27 102 - -
Sed08g1872 280 SMART rrm1_1 28 100 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0147 Sed-Chr4:1006578 Sed08g1872 Sed-Chr8:33260278 5.80E-41 dispersed
Sed05g1598 Sed-Chr5:29745954 Sed08g1872 Sed-Chr8:33260278 8.90E-42 dispersed
Sed08g1872 Sed-Chr8:33260278 Sed11g0826 Sed-Chr11:17826104 1.80E-144 dispersed
Sed04g2293 Sed-Chr4:36611721 Sed08g1872 Sed-Chr8:33260278 1.00E-46 transposed
Sed11g0825 Sed-Chr11:17826104 Sed08g1872 Sed-Chr8:33260278 4.10E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006014 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39