Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1878 ATGATATACCATATTGAAAGCAAATTTAGACCCTTGACATTATTTTCTGCGGTGAATGCATGGAAAGCCGAGATGCCTCTACCTCTCTTCTCATCTGATCTCAAAACCAACGAGAGTAGCACTTTACTGAAATTTATATCTGAAACTTCTGAAGGAGTTTCATCCCAGCTGCACAAAGGAATAATGAGATCAGCTCGCAAAGTGGTGTTTGATGAGATTGTTGGCAGCCTCATTGCAGATTTTATTACCATGAAGAAATCTGAAAGACAAATAAAGGTTGAACAGACCAATCGGAGTACGAAGGCTTGCCCTTTGGACAGCAGAATGGCTGAAGTTACTGGAGGAGAGGATCTTCCTGCTGATTCTACGTCTGAACTACAAGGATTCTTTAGTGTGAAATCTGAAAGAGAAATACAGGTTGAACAAACCAACCAGAGTACGAAGGCTTGCTCTTCGGACAGCAGAATGGCTGAAGTTACTAGAGGAGAGGAACTTCCTGCTGATTCTACGTCCGAACTACAAGGATTCTTTAGTGTGAAATCTGAAAGAGAAATACAGGTTGAACAAACCAACCAGAGTACGAAGGCTTGCTCTTCGGACAACGGAATGGCTGAAGTTACTAGAGGAGAGGATCTTCCTGCTGATTCTACGTCTGAAGTACAAGGCTTCTTTAGTGTTTCCGAGGAAATTTCTATTGATGCTGCTGTTCCTGTTCAATCACTTAAAATGGTTGAGAGTGTTGAGAACTTTAAGGAAGTGCATGCAGCTATTTGTCAAATTCTTTTTGACTACTCCTTACAAGTAGTTTGGAATGCTGTTTCTTCTGATACTGTGGCAGAGTATTCATCTTCATGGCGGAGGAAAAGACTTTGGTCTCATGATTCTGCCTATAATTTAGATTCTATTGTTTATAGTGATCATGTCAAGAAGATTGATACTGATTGTGTCGAGAAGATTGAAAAAATACCTGCCGAAGCTACATACCATATTGAAAGCGAATTGAAACCCTTCACATTATTTTCTCCGGTAGATTCATGGAAAGCTGAGATGTCTCCAACTCACTTATCTGATCTTAAAACCAATGAGAGAAGCTCTTTCTTGGAATTTTTATCTGAAACTTCTGAGGAAGTTTCATCCCAACTGCACAAAGGAATAATGAAAATTGCTCACAGAGTTGTGCTTGATGAGATCGTTGGCAACATCATTGCAGATTTTATCACCATGAAAAAGTCTGAAAGACAAATGAAGGTTGAACAAACCAACCGGAGTACGGAGGCTTGCTCCGTAGGCAGCATAATGTCAGAAGTTACTAGAGGAGAGGCTCTTCCTGCTGATTCTACACCTGAAGTGCAAGGCTCTAGTGTTTCTGAAAAAACTTGTACAGATGCTGTTGTTCCTGTTCAGTCTCTTAAAGTAGTTTGGAGTGTTGAGAATTTTAAGGAGGTGCATGCAGTTATTCGTCAAATGCTTTTTGACTACTCCTTACAAGTAGTTTGGAATGCTGTTTTTTACGATAATGTGGCAGAGTATTCATCTTCCTGGCGGAGGAAAAGACTTTGGTCTTATCATCCTCACTGTGATTTAGCTTCTATTGGATGTAGTGATCGTGCCAAGAAGATTGAAAAATTACCTGCTGAATCTGCTTTATCACAGAAAGAATCTTTTCTCCATGGTGTCAATTGCTTATCAGTCTCTGAATTTAAGGGATCCCAAACAGAAAACCATGTGCACTCGCCTGTTATACCTCTGTCAGTTTCTGTTGGACACAAATGTTCTAGGCCAACTACCCATTCTGGTTGTTATAGGCCAAAGGAAGACCTGAATTGCACGGTGGAATGCCTGGAAAAAGAGCTTCATTCCTCTGCTAAGGTATCTTTGATTGAGTATGTTCGCGATATACTCGAGGAAGAAGTGATGAGCTCATGTACCTCTTCAACAGATTTAAAATTAAATAAGACAAACTCCTATGGTAATACGCGGGCAGAAAAAATTTCATGTGAACTTAATTTAGCTCCATTGCCAGAGGACAATCCTTCTATAGATACGTCTCTGAATTCTGCTGCTGATTCATTATCTAGAGTGTTCAAAGAAATCTATACAAATGAAGGTTGTGCTTTTAATGAAGATGCCAATGAAATACCAGCTCCTAGTATTGAGGAAAATCCTACCTTTCTATTTCCATCTCCTGCTTGTAAGTCTCGTCTTCCAAGCTCAAAAACGTGTTCTCCTATGATTGAGGGGTGCACTATGCTTGCAATATGCAGGCAGAAATTACACGATGTTGTTCTTAAGGAATGGACATCATCATACAATGATGATCTTTATCAGCTTGTTACCTCATGGATTACGTCGAAGAAACTTTGCAATCCTAATGGAATTGTGGAAGGAGCATGTGCTGGCATTGAAGTCTCTAAAATACCAGACAAATTAATGGAAGAATCAAAGCGCTTCTTGGAATCTTCTCTTGTAACTGTTCGTTATACTTATTACCGCAAGAAGTTATCCAAGAAAAAGTTAGGATCTCCAAATTTTGCTACTGAGGGTAACCCTGTTATACAAAATCAACCTTCTGAAAAGTCAACAAAAGATGACGTTTCTGAGGATGTGCATGAGACTACAGACACTGAGATTGCTTCTTTGACACTTAAAAGTATTGCAAAAAATAAAAGGCGGAGGGACATGTCTGTTAATGTTACCTGCAAGCGACCTTTTGAAGAAGTTACACTACCCAGTAGCCGTTCTTCTGGGAAAAACATAAGTGGCATGAAAAAGTTAAAAATTTCACCTATAGTTAAAGATGATAATGTCAAGAAGGATTCTGTGAAACACGGGAAAGGAAGAATGATAAGATCCCTTTTGGAGCACAAAAATGTTGATAAGGTTATGAATAAATGCGATCGTGGAGTTTGTGCCCAGAAAAAGCTTTCTGTGAATATGTCGAAGAAAAAGAAGAAGCAGAAGATCGATGAGTTATCATTATCTCGCAATAAGGTCTTGAGAATAGCAGGTGATGTTAGCAAGCAAGCAAGAAGTAAGAAGGTTGTTGCTCAAAAGGAAAAGTCTGATAAATTTAGGAAGTTATATCCCTCTATTAGATCTGATGGTTGTGCCCGCTCATCAATTGATGGCTGGGAATGGCGTAGATGGTCACTAAAAGCCAGTCCTGCTGAGAGAGCTCGTAGTAGGGGTATCAAATACTTAAATTCTGAGAAATTAGGTCATGATGTCAGTACATCCCATTTGTTAAATAGCAAAGGCCTTTCTGCACGAACAAATAGGGTAAAACTGCGGAATCTTCTTGCTGCAGCAGATGGTGCTGACCTTTTAAAAGCATCTCAATTAAAGGCAAGGAAAAAATGTCTACGCTTTCAACGTAGTAAGATCCATGACTGGGGTCTAGTTGCACTAGAGCCAATTGAAGCAGAGGATTTTGTAATTGAATATGTTGGTGAACTAATTCGTCCTAAGATATCAGACATAAGAGAACGCCAGTATGAGAAGATGGGAATTGGCAGCAGTTATCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGCGTGGGGGTGTTGCTCGATTTATAAACCATTCTTGTGAGCCTAATTGCTACACCAAAGTTATAACTGTTGAAGGTCAGAAGAAAATTTTCATCTATGCAAAGAGACACATATCTGCTGGTGAAGAAATTACGTACAATTACAAATTTCCTTTGGAGGAGAAGAAAATTCCTTGTAATTGCCGTTCAAGGAGGTGTCGTGGATCTCTGAACTAG 3777 39.45 MIYHIESKFRPLTLFSAVNAWKAEMPLPLFSSDLKTNESSTLLKFISETSEGVSSQLHKGIMRSARKVVFDEIVGSLIADFITMKKSERQIKVEQTNRSTKACPLDSRMAEVTGGEDLPADSTSELQGFFSVKSEREIQVEQTNQSTKACSSDSRMAEVTRGEELPADSTSELQGFFSVKSEREIQVEQTNQSTKACSSDNGMAEVTRGEDLPADSTSEVQGFFSVSEEISIDAAVPVQSLKMVESVENFKEVHAAICQILFDYSLQVVWNAVSSDTVAEYSSSWRRKRLWSHDSAYNLDSIVYSDHVKKIDTDCVEKIEKIPAEATYHIESELKPFTLFSPVDSWKAEMSPTHLSDLKTNERSSFLEFLSETSEEVSSQLHKGIMKIAHRVVLDEIVGNIIADFITMKKSERQMKVEQTNRSTEACSVGSIMSEVTRGEALPADSTPEVQGSSVSEKTCTDAVVPVQSLKVVWSVENFKEVHAVIRQMLFDYSLQVVWNAVFYDNVAEYSSSWRRKRLWSYHPHCDLASIGCSDRAKKIEKLPAESALSQKESFLHGVNCLSVSEFKGSQTENHVHSPVIPLSVSVGHKCSRPTTHSGCYRPKEDLNCTVECLEKELHSSAKVSLIEYVRDILEEEVMSSCTSSTDLKLNKTNSYGNTRAEKISCELNLAPLPEDNPSIDTSLNSAADSLSRVFKEIYTNEGCAFNEDANEIPAPSIEENPTFLFPSPACKSRLPSSKTCSPMIEGCTMLAICRQKLHDVVLKEWTSSYNDDLYQLVTSWITSKKLCNPNGIVEGACAGIEVSKIPDKLMEESKRFLESSLVTVRYTYYRKKLSKKKLGSPNFATEGNPVIQNQPSEKSTKDDVSEDVHETTDTEIASLTLKSIAKNKRRRDMSVNVTCKRPFEEVTLPSSRSSGKNISGMKKLKISPIVKDDNVKKDSVKHGKGRMIRSLLEHKNVDKVMNKCDRGVCAQKKLSVNMSKKKKKQKIDELSLSRNKVLRIAGDVSKQARSKKVVAQKEKSDKFRKLYPSIRSDGCARSSIDGWEWRRWSLKASPAERARSRGIKYLNSEKLGHDVSTSHLLNSKGLSARTNRVKLRNLLAAADGADLLKASQLKARKKCLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRPKISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGVARFINHSCEPNCYTKVITVEGQKKIFIYAKRHISAGEEITYNYKFPLEEKKIPCNCRSRRCRGSLN 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33304369 33317778 - Sed0005718.5 Sed08g1878 723654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1878 1258 Pfam SET domain 1131 1236 IPR001214 GO:0005515(InterPro)
Sed08g1878 1258 ProSiteProfiles SET domain profile. 1119 1236 IPR001214 GO:0005515(InterPro)
Sed08g1878 1258 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 298 IPR044570 GO:0042800(PANTHER)|GO:0042800(InterPro)|GO:0048188(PANTHER)|GO:0051568(PANTHER)
Sed08g1878 1258 SMART set_7 1119 1242 IPR001214 GO:0005515(InterPro)
Sed08g1878 1258 Gene3D SET domain 1094 1258 IPR046341 -
Sed08g1878 1258 CDD SET_SETD1 1107 1254 IPR037841 GO:0042800(InterPro)|GO:0048188(InterPro)
Sed08g1878 1258 ProSiteProfiles Post-SET domain profile. 1242 1258 IPR003616 -
Sed08g1878 1258 MobiDBLite consensus disorder prediction 841 873 - -
Sed08g1878 1258 SUPERFAMILY SET domain 1115 1255 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1878 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1876 Sed-Chr8:33304369 Sed08g1878 Sed-Chr8:33304369 0.00E+00 dispersed
Sed08g1878 Sed-Chr8:33304369 Sed09g0478 Sed-Chr9:4622345 2.70E-38 dispersed
Sed08g1877 Sed-Chr8:33304369 Sed08g1878 Sed-Chr8:33304369 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003632 1 8 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 5 5 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39382 PF00856 SET 1.30E-21 No_clan Sed TR