Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1891 ATGGCCTCGAAGACGAGTTCGAAACCTTCTGCAAAGCAAACTAAGGGGATAACTGGCGTTAAAGCTACTGATGCTAGTGATCTGAAGTTCTTACCTTTGCAGACTTCACCGGGAAACAAAATTGGTTCAGTGATCTCTGGAGATGCATCAAACTTCATAGAGAGTTCATTAGATCAGTCTACTTTGACTTATTTATCCGATACCAAATCCTCAAGTTCGAATGCTAAAGAGTCCACTGAGTCTTGTAATCAGAATGTTGAAGATAATTCCCTGAAGCCTGGGTCTAAGACATTGACAGAAGGAGATCCTGCTCCTAGCGGGACGCGGGGCTTAGCAGAGGGCTCCATTGATCAAGAGAAGAAAACATCCGAATGTAGGAGTGGAAAGGATAGTTCAGTTTCTGCAAAGGTCAGTATTGGGGCAAAGAGTCTTGCCAAGACCAATGGAAGTACTAAGGCTAGTGACCGTGTCGAGATGGTTGAAAGTGGCAAGAGCAGTATGTGTCGAGGAAGCACAAGCAGTGACATCAGTGATGAAAGCACGTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAGGCAAATGACTTGAGATGGGAGGCAATTCAAGCTGTACGCGCAAGAGATGGGACTTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGTGATATCGGAAGCGTTTACCTGTCGGAATTGCGTGGCACTAAATGTTATTTTGCAATGAAGGTCATGGACAAAGGGTCCCTAGCAAGTCGAAAGAAGCTACTTCGCGCTCAGACCGAAAGAGAAATACTGCAGTCTCTTGATCATCCATTCCTTCCATCATTATATACTCATTTTGAGTCTGACAAGTTCTCCTGCGTGGTGATGGAGTTCTGCCCTGGGGGAGACCTGCACACTCTTCGGCAGAGACAGCCAGGGAAGCATTTTCCCGAACAGGCGGTGAAATTTTATGTGGCAGAGATTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTCTACCGGGACCTGAAGCCTGAAAATGTTCTTGTGAGGGAAGATGGACACATTATGCTTTCGGACTTCGATCTTTCCTTAAGATGCACTGTTAGTCCAACGTTGGTGAAGGGCTCATGTTCCGAGTCTGAACCCTTGCGAAAGAATTCTGCTTACTGTGCACAGCCAGCTTGTATCGAGCCTTCCTGCATCCAGCCGTCCTGTGTAGTTCCGACATCGTGCTTCACTCCTCGACTTTTCTCTAGCAAGTCAAAGAAGGATAAAAAGGATAGAAAACCCAAGACTGAATTAGTTAACCAGGTAACGCCATTGCCAGAGCTAATTGCGGAGCCTACTGAGGCAAGGTCAATGTCATTCGTTGGTACGCACGAGTACTTGGCACCGGAGATCATTACAGGTGAAGGACATGGAAGCGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATATGAACTGTTGTTTGGTAAAACTCCTTTCAAAGGATCTGGGAATCGAGCCACGTTGTCTAACGTCGTCGGTCAGCCTTTGCGCTTCCCCGAATCACCAGTAGTTAGTTTTGCTGCAAGGGATCTCATCAGAGGATTGCTTGTCAAGGAACCACAACATAGATTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACATCCATTCTTTGAAGGTGTTAACTGGGCATTAATACGATGTGCTTCGCCACCCGAAGTACCGAAGCCTGTCGAGATTGAGAGGATACAATCACCAGCACCAGCATCTTCAGTGATTGGAAAAGCTGTAATGGCTAGGCCTGGTCCTGATTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1854 46.06 MASKTSSKPSAKQTKGITGVKATDASDLKFLPLQTSPGNKIGSVISGDASNFIESSLDQSTLTYLSDTKSSSSNAKESTESCNQNVEDNSLKPGSKTLTEGDPAPSGTRGLAEGSIDQEKKTSECRSGKDSSVSAKVSIGAKSLAKTNGSTKASDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGTLGLGHFRLLKRLGCGDIGSVYLSELRGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPSLYTHFESDKFSCVVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEILLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKGSCSESEPLRKNSAYCAQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDKKDRKPKTELVNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIITGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLSNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIQSPAPASSVIGKAVMARPGPDSKSSDNYLEFDFF 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33424281 33428621 - Sed0004052.2 Sed08g1891 723667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1891 617 Gene3D Phosphorylase Kinase; domain 1 216 301 - -
Sed08g1891 617 ProSiteProfiles Protein kinase domain profile. 218 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1891 617 Pfam Protein kinase domain 455 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1891 617 Pfam Protein kinase domain 219 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1891 617 MobiDBLite consensus disorder prediction 1 46 - -
Sed08g1891 617 SMART serkin_6 218 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1891 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1891 617 FunFam serine/threonine-protein kinase D6PK-like 302 369 - -
Sed08g1891 617 Gene3D Transferase(Phosphotransferase) domain 1 302 371 - -
Sed08g1891 617 MobiDBLite consensus disorder prediction 65 132 - -
Sed08g1891 617 PANTHER FLIPPASE KINASE 1-RELATED 87 579 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed08g1891 617 MobiDBLite consensus disorder prediction 1 20 - -
Sed08g1891 617 Gene3D Transferase(Phosphotransferase) domain 1 452 576 - -
Sed08g1891 617 MobiDBLite consensus disorder prediction 29 46 - -
Sed08g1891 617 MobiDBLite consensus disorder prediction 144 175 - -
Sed08g1891 617 FunFam Serine/threonine-protein kinase D6PK-like 216 301 - -
Sed08g1891 617 FunFam Serine/threonine-protein kinase AGC1-7 451 576 - -
Sed08g1891 617 MobiDBLite consensus disorder prediction 65 96 - -
Sed08g1891 617 SUPERFAMILY Protein kinase-like (PK-like) 193 586 IPR011009 -
Sed08g1891 617 CDD STKc_phototropin_like 217 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1891 Sed-Chr8:33424281 Sed11g1164 Sed-Chr11:27556452 1.80E-285 dispersed
Sed08g1890 Sed-Chr8:33424281 Sed08g1891 Sed-Chr8:33424281 0.00E+00 tandem
Sed08g1891 Sed-Chr8:33424281 Sed08g1892 Sed-Chr8:33424281 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79657 PF00069 Pkinase 2.40E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1891 K08286 - csv:101213662 1013.06