Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1920 ATGACAAGAAAGAAGGTGAAACTGGCTTTCATAACAAACGACGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAAAAAGGGTTCTTAAAAAAGCTAAGCGAGCTCACAACTCTGTGCGGCATCCAAGCCTGCGCCATCATCTTCAGCCCTTTCAGTCCCAATCCGGACATCTGGCCCAACCCCAATGGCGTCCAAAGGGTCCTCTCTCACTTCAAAACCCTCCCCGAGATGGACCAGTACAAGAAGATGGTCAACCAGGAGACCTTCCTCCGCCACCGCATCGCCAAGGCCGCCGCCCAGCTCAAGAAGCTCCAGCGCGACAACCGCGAGAAGGAGATCGCCCACCTCATGTTTCGTAGCCTCATTGACGGAGGGGCTCCCCCGCGGGATCTCAATGTGGTGGACTTGAATGACTTGGGGTGGATGCTCGACCAGAAGGTGGCCGATATTTGCAAGCGGATCGAGTTGCTTACTGCCGTGGACCGACCGCTGCACGAGCCTGCCGTGGAGCCGGGGTGGTTCGTGGATATGGTGTGTCAAGGAGGGGAGGATCAGATGGGATTGAATGTTGGAGATGATGTGATTCACTTTCCTAGCTTTGGTGAGGATGAAAACCTAGGTGGTTTTTGGTCAAACAGCAATGCATTTTTCCTTTGA 657 53.42 MTRKKVKLAFITNDAARKATFKKRKKGFLKKLSELTTLCGIQACAIIFSPFSPNPDIWPNPNGVQRVLSHFKTLPEMDQYKKMVNQETFLRHRIAKAAAQLKKLQRDNREKEIAHLMFRSLIDGGAPPRDLNVVDLNDLGWMLDQKVADICKRIELLTAVDRPLHEPAVEPGWFVDMVCQGGEDQMGLNVGDDVIHFPSFGEDENLGGFWSNSNAFFL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33623589 33624245 - Sed0010970.1 Sed08g1920 723696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1920 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Sed08g1920 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Sed08g1920 218 Coils Coil 87 114 - -
Sed08g1920 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 Gene3D - 13 112 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed08g1920 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 152 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed08g1920 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0389 Sed-Chr4:2808705 Sed08g1920 Sed-Chr8:33623589 1.30E-57 dispersed
Sed08g1920 Sed-Chr8:33623589 Sed12g1333 Sed-Chr12:10187062 1.20E-29 dispersed
Sed08g1920 Sed-Chr8:33623589 Sed02g0450 Sed-Chr2:41609753 1.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39384 PF00319 SRF-TF 3.40E-16 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1920 - - - 0.0