Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1920 | ATGACAAGAAAGAAGGTGAAACTGGCTTTCATAACAAACGACGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAAAAAGGGTTCTTAAAAAAGCTAAGCGAGCTCACAACTCTGTGCGGCATCCAAGCCTGCGCCATCATCTTCAGCCCTTTCAGTCCCAATCCGGACATCTGGCCCAACCCCAATGGCGTCCAAAGGGTCCTCTCTCACTTCAAAACCCTCCCCGAGATGGACCAGTACAAGAAGATGGTCAACCAGGAGACCTTCCTCCGCCACCGCATCGCCAAGGCCGCCGCCCAGCTCAAGAAGCTCCAGCGCGACAACCGCGAGAAGGAGATCGCCCACCTCATGTTTCGTAGCCTCATTGACGGAGGGGCTCCCCCGCGGGATCTCAATGTGGTGGACTTGAATGACTTGGGGTGGATGCTCGACCAGAAGGTGGCCGATATTTGCAAGCGGATCGAGTTGCTTACTGCCGTGGACCGACCGCTGCACGAGCCTGCCGTGGAGCCGGGGTGGTTCGTGGATATGGTGTGTCAAGGAGGGGAGGATCAGATGGGATTGAATGTTGGAGATGATGTGATTCACTTTCCTAGCTTTGGTGAGGATGAAAACCTAGGTGGTTTTTGGTCAAACAGCAATGCATTTTTCCTTTGA | 657 | 53.42 | MTRKKVKLAFITNDAARKATFKKRKKGFLKKLSELTTLCGIQACAIIFSPFSPNPDIWPNPNGVQRVLSHFKTLPEMDQYKKMVNQETFLRHRIAKAAAQLKKLQRDNREKEIAHLMFRSLIDGGAPPRDLNVVDLNDLGWMLDQKVADICKRIELLTAVDRPLHEPAVEPGWFVDMVCQGGEDQMGLNVGDDVIHFPSFGEDENLGGFWSNSNAFFL | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33623589 | 33624245 | - | Sed0010970.1 | Sed08g1920 | 723696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1920 | 218 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Sed08g1920 | 218 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Sed08g1920 | 218 | Coils | Coil | 87 | 114 | - | - | |
Sed08g1920 | 218 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | Gene3D | - | 13 | 112 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed08g1920 | 218 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 152 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed08g1920 | 218 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0389 | Sed-Chr4:2808705 | Sed08g1920 | Sed-Chr8:33623589 | 1.30E-57 | dispersed | |
Sed08g1920 | Sed-Chr8:33623589 | Sed12g1333 | Sed-Chr12:10187062 | 1.20E-29 | dispersed | |
Sed08g1920 | Sed-Chr8:33623589 | Sed02g0450 | Sed-Chr2:41609753 | 1.10E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39384 | PF00319 | SRF-TF | 3.40E-16 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1920 | - | - | - | 0.0 |