Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1942 ATGGCTTTGTGGGATTTTCTATTGTTGTTTTTCCTTTTCATCTTTGGTTCTATTCCGCTTGTTCCTGCCCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATATACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGAGTGGTAGTGGCGGCGATCCATGTGCAGGGCCATGGAAAGGGGTGACTTGTGAAGGCTCTGCAGTTGTTTCCATTGTGATTTCTGGGTTGGGGCTGAATGGCACAATGGGTTATGCACTCTCAAGTCTTTTGTCATTGAAAAATCTTGATGTGAGTGACAACAATATTCATGACACGATTCCTTACCAGTTACCGCCGAACCTCAGGAGCCTAAATTTGGCAAAAAACAATTTAACCGGTAATCTTCCTTATTCATTTTCCACCATGGCTTCTCTCAATTATCTGAATATGAGTCATAATTTGCTTGCTCAGGCGATAGGAGACGTTTTCAACAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACGGGGGATCTTCCTAATTCTTTGAGCTCATTATCCAACGTTTCTTCCCTCTTTTTGCAGAACAACCAATTGACCGGTTCTCTCAATAATCTTATCAGTTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAATCAATTGAAAATTTCATATACAATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGAAGCCCCAAACATCCTGGCTCAGGCGGTGGCACTCACACTGCCTCGAGTTCTGATAGCAGCTCGAACAAAGGATTACCCATTTTAGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTCATCCTCATCGTGTTAGTTGCTTTTGCTGTGTGTATCCAGAAGAGAAAACGTAAGAACGTTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTGTTGGCCCTAGTGTGAATATTGAGGTGCAAGAGCACCGGGTAAGAAGCGTTGCTGCTGTGGCCGATATTAGGCCGCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCGAAAAGTGGATCAGTGAAACGGATACAGTCCCCTATTACTGCTACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACGAATAGCTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGACTTTCCGAACGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCACTACAGGAAGAAGATAATTTTCTTGAAGCAGTCTCAAACATGTCAAGATTGAGGCACAATAACATTGTCGCACTAAATGGTTATTGTGTGGAGCATGGTCAGCGTCTTCTAGTTCACGAGTTCATTGGAAATGGAAGTTTACATGATATGCTCCATTTTGCTGAAGATAGTAGTAAAACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTCGATGAAGAGCTCAACCCCCATTTGTCTGATTGCGGGTTGGCTGCTCTAACACCCAACACAGAGCGGCAGGTTTCTACCCAAATGGTAGGTTCCTTTGGCTATAGTGCTCCTGAATTTGCTTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGCAAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATTCTACTTTGAATGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGACATAATTGCTCTATGTGTTCAGCCTGAACCCGAATTTCGGCCTCCAATGTCTGAAGTAGTACAAGCATTGGTACGTTTAGTGCAAAGAGCCAGTGTGGTAAAAAGGCATTCAAGTGACGAGTCGGGTTTTGCTTACAAAACGCCCGACCATGATTCAGTTGAGCTGCCATTTTGA 2127 43.91 MALWDFLLLFFLFIFGSIPLVPALTDASDVQALQVIYTSLNSPPQLTGWSGSGGDPCAGPWKGVTCEGSAVVSIVISGLGLNGTMGYALSSLLSLKNLDVSDNNIHDTIPYQLPPNLRSLNLAKNNLTGNLPYSFSTMASLNYLNMSHNLLAQAIGDVFNNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYNGNSFDNSPAPPPPPFTPPPPGRSRRSPKHPGSGGGTHTASSSDSSSNKGLPILAIVGIILGAIIFILIVLVAFAVCIQKRKRKNVGLRASSGRLSVGPSVNIEVQEHRVRSVAAVADIRPLPAEKMNPERLQAKSGSVKRIQSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHNNIVALNGYCVEHGQRLLVHEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRARSEQSLVRWATPQLHDIDALAKMVDSTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFAYKTPDHDSVELPF 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33820667 33826344 - Sed0024112.1 Sed08g1942 723718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1942 708 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Sed08g1942 708 Gene3D Transferase(Phosphotransferase) domain 1 478 701 - -
Sed08g1942 708 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515(InterPro)
Sed08g1942 708 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 28 679 IPR046959 -
Sed08g1942 708 Gene3D Phosphorylase Kinase; domain 1 361 477 - -
Sed08g1942 708 MobiDBLite consensus disorder prediction 244 263 - -
Sed08g1942 708 Pfam Protein kinase domain 403 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1942 708 SUPERFAMILY Protein kinase-like (PK-like) 379 674 IPR011009 -
Sed08g1942 708 SUPERFAMILY L domain-like 25 232 - -
Sed08g1942 708 ProSiteProfiles Protein kinase domain profile. 400 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1942 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 478 688 - -
Sed08g1942 708 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sed08g1942 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Sed08g1942 708 MobiDBLite consensus disorder prediction 241 284 - -
Sed08g1942 708 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Sed08g1942 708 Pfam Leucine Rich Repeat 211 231 IPR001611 GO:0005515(InterPro)
Sed08g1942 708 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 365 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1999 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.20E-259 dispersed
Sed01g2000 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.40E-247 dispersed
Sed01g2001 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 7.20E-233 dispersed
Sed02g0342 Sed-Chr2:40075799 Sed08g1942 Sed-Chr8:33820667 2.10E-107 dispersed
Sed08g1942 Sed-Chr8:33820667 Sed11g1725 Sed-Chr11:32358988 1.10E-132 dispersed
Sed01g1998 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.00E-304 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79659 PF07714 PK_Tyr_Ser-Thr 3.90E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1942 - - - 0.0