Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1963 ATGGCATCCACTTCCAAGCTCCTCTCTATCTTCTTCATTCTCATTTGTTTCCTCACATCCCAAGTTGTTTCACAATCTGATGAATGTGCAACAACAACCAATGCATGCACCAACAAAGAAAAAGCCTTACGCCTTAAAATCATTGCCATTTTCGCCATCCTCATTGCGAGTGTGATCGGCGTTTGCTCGCCGCTCTTCACCCGATCGATCCCCGCGTTGCACCCGGATAGAAACATGTTCATCATCGTCAAAGCCTTTGCTGCGGGCATCATTCTTGCCACAGGGTTCATGCACGTTTTGCCTGATTCTTTCGACATGCTTTGGTCGGACTGTTTGAAGGAGAATCCATGGCATAAGTTTCCCTTCTCGGGTTTTGTTGCCATGATATCAGCGATTGTCACGCTCATGGTGGACTCCATGGCTACTAGTTTGTATACCAAGAAACATAACGAAGTTATGCCTTCAAATTCTCAAGGAGAAAATCAAGAGTTGCCCGTAGTTAGTGGTGGCCATTTTCATGGCCACCATCATCGAGATATGAAAGAAATTAATGCGGGTTCTCAACTATTGCGTTATCGTGTTATCGCCATGGTTTTGGAATTGGGAATTGTGGTTCATTCTGTTGTGATTGGACTTTCACTTGGAGCAACAAATGATACATGCACAATCAAAGGTCTAGTGGCTGCCCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGATGTATTCTTCAGGCAGAGTACAAGTGGATGAAGAAGGCAATAATGGTATTCTTTTTCTCAGTGACAACCCCATTTGGGATAGCCCTAGGAATAGGGTTGTCTAGGACATACAAAGAAAACAGCCCTAGTGCCCTAATAGCTGTGGGGTTATTGAATGCTTCTTCAGCTGGGCTTCTCATCTACATGGCCTTAGTGGATCTTCTTTCATCTGACTTTATGGGCCCAAAGTTGCAAAGCAGCATCAAACTCCAAATCAAATCTTACATTGCTGTCCTTTTGGGAGCTGGTGGCATGTCCTTAATGGCAAAGTGGGCTTGA 1047 44.51 MASTSKLLSIFFILICFLTSQVVSQSDECATTTNACTNKEKALRLKIIAIFAILIASVIGVCSPLFTRSIPALHPDRNMFIIVKAFAAGIILATGFMHVLPDSFDMLWSDCLKENPWHKFPFSGFVAMISAIVTLMVDSMATSLYTKKHNEVMPSNSQGENQELPVVSGGHFHGHHHRDMKEINAGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMVFFFSVTTPFGIALGIGLSRTYKENSPSALIAVGLLNASSAGLLIYMALVDLLSSDFMGPKLQSSIKLQIKSYIAVLLGAGGMSLMAKWA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34085745 34088135 + Sed0006057.1 Sed08g1963 723739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1963 348 PANTHER ZINC/IRON TRANSPORTER 40 347 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Sed08g1963 348 Pfam ZIP Zinc transporter 44 345 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Sed08g1963 348 NCBIfam ZIP zinc/iron transport family 32 348 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1963 Sed-Chr8:34085745 Sed11g0883 Sed-Chr11:21321665 6.90E-69 dispersed
Sed05g1825 Sed-Chr5:31858292 Sed08g1963 Sed-Chr8:34085745 4.30E-85 transposed
Sed06g1122 Sed-Chr6:31962100 Sed08g1963 Sed-Chr8:34085745 8.30E-91 transposed
Sed01g1946 Sed-Chr1:14472986 Sed08g1963 Sed-Chr8:34085745 2.50E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1963 K14709 - csv:101221552 581.637