Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1977 ATGGAGTTTCTCATCCTCATTTCCCTCCCCTTTCTGCCCCTCCTCTCCGCCGCCACCGCCGGCAGTGGGGCTTGCGGGTACGGGAATCTGTACAGCCAAGGGTACGGCACCAACACTGCGGCGGTGAGCGCCGCCCTTTTCAACGATGGGTTGAGCTGTGGGTCGTGCTATGAGATCAAGTGCGTGAACGACCCACAATGGTGCCTTGCGGGCTCTGTTTTGGTCACCACCACCAACTTCTGTCCGCCCAACACCGCCCTGTCCAACACCGCCGGCGGCTGGTGCAACGCCCCACTTCACCATTTTGACCTCTCCCAGCCTGTCTTCCTCCGCATTGCTCGGTACCGTGCCGGAATCGTCCCCGTCGCTTATCGGAGGGCATCATGTAAGAGAAAAGGAGGAATAAGGTTCTCGATGAACGGCCATTCTTACTTCAACCTGGTGCTGATTACGAACGTGGGTGGCGCCGGAGATGTGCGTGCGGTGTCTATTAAGGGCTCAAGAACCAAGTGGCAATCCATGTCCAGAAATTGGGGCCAGAATTGGCAGACCCATGTCTTATTGGACGCCCAATCTCTGTCTTTCAAGCTCACCACCAGCGACGCCCGGACTGTTGTTTCCGCCAATGTGGCTCCCGCCGGCTGGCTCTTCGGCCAGACCTTCACCGGCGCTCAGTTCCGGTGA 684 58.63 MEFLILISLPFLPLLSAATAGSGACGYGNLYSQGYGTNTAAVSAALFNDGLSCGSCYEIKCVNDPQWCLAGSVLVTTTNFCPPNTALSNTAGGWCNAPLHHFDLSQPVFLRIARYRAGIVPVAYRRASCKRKGGIRFSMNGHSYFNLVLITNVGGAGDVRAVSIKGSRTKWQSMSRNWGQNWQTHVLLDAQSLSFKLTTSDARTVVSANVAPAGWLFGQTFTGAQFR 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34164854 34168098 + Sed0018082.1 Sed08g1977 723753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1977 227 SMART dpbb_1 39 124 IPR007112 -
Sed08g1977 227 Gene3D - 14 130 IPR036908 -
Sed08g1977 227 FunFam Expansin 134 226 - -
Sed08g1977 227 PRINTS Expansin/Lol pI family signature 21 39 IPR007118 GO:0005576(InterPro)
Sed08g1977 227 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576(InterPro)
Sed08g1977 227 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Sed08g1977 227 PRINTS Expansin/Lol pI family signature 171 185 IPR007118 GO:0005576(InterPro)
Sed08g1977 227 PRINTS Expansin/Lol pI family signature 117 133 IPR007118 GO:0005576(InterPro)
Sed08g1977 227 PRINTS Expansin signature 209 225 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 73 83 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 145 166 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 133 145 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 61 72 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 92 109 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 34 48 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 109 122 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 SUPERFAMILY PHL pollen allergen 131 223 IPR036749 -
Sed08g1977 227 Pfam Expansin C-terminal domain 135 212 IPR007117 -
Sed08g1977 227 SUPERFAMILY Barwin-like endoglucanases 20 152 IPR036908 -
Sed08g1977 227 Pfam Lytic transglycolase 39 124 IPR009009 -
Sed08g1977 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 144 223 IPR007117 -
Sed08g1977 227 Gene3D - 134 226 IPR036749 -
Sed08g1977 227 PANTHER EXPANSIN-A15 22 226 IPR002963 GO:0009664(InterPro)
Sed08g1977 227 CDD DPBB_EXPA_N 16 129 - -
Sed08g1977 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 22 134 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1977 Sed-Chr8:34164854 Sed11g2112 Sed-Chr11:35050955 1.90E-91 dispersed
Sed08g1977 Sed-Chr8:34164854 Sed06g1515 Sed-Chr6:39836514 9.70E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1977 - - - 0.0