Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1979 ATGGAGAATCATCAAGAAATGAACTTGGTTTTGTCTTCTGATTCAAAGCCAAGGCTGAAATGGAGTCATGAGCTTCATCACAGATTTGTTGATGCTGTCAATCATCTTGGTGGAGCTGATAAGGCCACACCTAAGAGCTTGATGAGAGTGATGGGAATCACTGGCCTCACTCTGTATCACCTCAAGAGCCATTTACAGAAATACAGATTGGGAAAAAGCCAACAGTCTGAATCCAATGTCCAACTCAAGCTGGAAGAATTCAAAGAGAAACAGAGAAAAGACAGGAATTTGAATGAAGAAAACAGCCATGCGAGTCAAGATAACAACACGAACGAAAGCATTAAGATATCTGAAGCACTACAAAAGCAACTAGAAGCACAAAAGAAACTACACGAGCAAATAGAAGTTCAAAAGCATTTACAGCTGAGAATCGAAGCACAAGGAAAGTACTTACAAACAATTCTAAGAAACGCACAAGACACAATCGCTGGGTATGGATATTGTTCTGAAGCACTGGAACAGGCCAAGGCTGAGCTTTCTCAGCTGGCTTCAATGGTCAACTCTAGATGTCAGAGCTCTTCACTGTCGGGATTAACAGAGTCAACGGAGCTCAAAGTCAATGGCGTTGAAATGGGTGAAGTCAGAGTGACAAGAATGTGCTCCATTGAAAGAAGCTCTTTGACTTCAGAGGAGTGCCCAATTATGAAGAAAAGGAAAGGAAAAGAAATGGAACAAGAACAAGAACAAGAACAAGAACAAGAACAGAGCAGCTCTGTTCTTGAAGGAGGTTTTAAGAGATTAAACAAGGATAAAAGTGATGTGGATCACCATGAATTTGGAATGGGATTGCAGTTGATTGAGTTTCTTTGA 870 40.8 MENHQEMNLVLSSDSKPRLKWSHELHHRFVDAVNHLGGADKATPKSLMRVMGITGLTLYHLKSHLQKYRLGKSQQSESNVQLKLEEFKEKQRKDRNLNEENSHASQDNNTNESIKISEALQKQLEAQKKLHEQIEVQKHLQLRIEAQGKYLQTILRNAQDTIAGYGYCSEALEQAKAELSQLASMVNSRCQSSSLSGLTESTELKVNGVEMGEVRVTRMCSIERSSLTSEECPIMKKRKGKEMEQEQEQEQEQEQSSSVLEGGFKRLNKDKSDVDHHEFGMGLQLIEFL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34185623 34187666 - Sed0014211.1 Sed08g1979 723755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1979 289 Coils Coil 117 137 - -
Sed08g1979 289 Pfam MYB-CC type transfactor, LHEQLE motif 114 160 IPR025756 -
Sed08g1979 289 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Sed08g1979 289 MobiDBLite consensus disorder prediction 234 273 - -
Sed08g1979 289 Coils Coil 236 256 - -
Sed08g1979 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Sed08g1979 289 MobiDBLite consensus disorder prediction 89 112 - -
Sed08g1979 289 FunFam Myb family transcription factor 15 73 - -
Sed08g1979 289 Gene3D - 15 73 - -
Sed08g1979 289 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 253 IPR046955 GO:0003700(InterPro)
Sed08g1979 289 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Sed08g1979 289 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1979 Sed-Chr8:34185623 Sed12g0477 Sed-Chr12:2868192 5.40E-35 dispersed
Sed08g1979 Sed-Chr8:34185623 Sed08g1980 Sed-Chr8:34185623 6.30E-108 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39388 PF00249 Myb_DNA-binding 3.00E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1979 - - - 0.0