Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1987 ATGGAGCATGGAGCTCTTGTGTCAAAGGACAAGGGGGACACAGATCCTCCGAGTTCCTACAAACAAATCATACTGGTCGCAGCCATTGCGGCTGGAATCCAATTCGGTTGGGCTCTTCAGCTCTCTTTACTAACCCCATACATCCAACAACTCGGCGTTCCGCACACGTGGTCCGCTTTCATTTGGCTCTGCGGCCCAATGTCGGGTCTCATAATTCAGCCCACGGTCGGTTACTATAGCGACCGCTGCACCTCTAGGTTCGGCCGCCGCCGTCCCTTCATAGTGGCCGGAGCCGGCTTCGTGGCCATGGCAGTATTCCTCATCGGATTCGCCGCCGACATCGGCCATTCGGCGGGCGACGAGCTAACGAAACCAACAAAACCAAGAGCGGTGGCGGTGTTCGTGGTCGGGTTCTGGGTGCTGGACGTGGCGAACAACATGTTGCAAGGACCATGCCGGGCGTTACTGGCGGACATGTCGTGCAACAATCAGAAGATGATGAGAGTTGCGAACGGATTCTTCTCCTTCTTCATGGGCGTGGGAAACGTGATGGGGTACGCGGCCGGATGCAACGCCACGCTGTACAAGGCGCTGCCGTTTACGGTCACCAAAGCGTGTGACGTGTACTGCGCCAATCTAAAAACGTGCTTCTTAATCGACATTATAATCATGGTCACCATCACGACGGTTGTGGTTTTGATCGTGGATGAGACGCCGTATGAGAGCGTGGAAATGGACGAGGAATGGACCCCGTTTTTCGGGGAGTTGTTTGGGGCGCTAAACGGGCTGTCGAAGCCCATGTGGATTTTGCTGCTCGTAACGGCGCTGAATTGGATCGGATGGTTTCCGTTTATAATGTACGATACGGACTGGATGGGGGCGGAGGTGTACGGGGGAAAACCGCGGGGCGGTTCGGGCGAGGAGCGGTTGTACCATCTGGGGGTTCGGGCCGGGGCGCTTGGGTTGATGATTAACTCGTTCGTGCTTGGGTTTTTCGCGCTGGTGATTGAACCGGTGAGCCGGGTTGTGGGTGGGCTCAGGTGGGTTTGGGGAATTGTGAATGTTGTGTTTGCGCTTTGTATGGGCTGTACTGTGGTTGTGAGTAAGGCGGCTGAACGGTGGAGATCTGTTCATGGGTTGAGATTTCCACCGTTGGATGTTAGGGCGGGTGCTTTCACTATCTTTGCGCTTTTGGGGATTCCTCTTTCGGTCACTTTTAGTGTTCCTTTTGCGCTTGCTTCCATCTTTTCTTCAACCTCCACGGCTGGTCAAGGGCTGTCATTGGGAATTCTGAACCTGTTCATAGTGATTCCACAGTTTATAGTGTCGGCAGTGAGTGGGCCGATTGATGCAGCCTTTGGAGGAGGAAACTTGCCCGCCTTCATAATGGGCGGAATCGCTGCCTTTGGAAGCGCAATCTGCGCCATGTTTCTCCTGCCCGACCCGCCGCCTCAATCCAATAATAATGCACTCTTAACCGATGACCCTTGA 1491 54.59 MEHGALVSKDKGDTDPPSSYKQIILVAAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSAFIWLCGPMSGLIIQPTVGYYSDRCTSRFGRRRPFIVAGAGFVAMAVFLIGFAADIGHSAGDELTKPTKPRAVAVFVVGFWVLDVANNMLQGPCRALLADMSCNNQKMMRVANGFFSFFMGVGNVMGYAAGCNATLYKALPFTVTKACDVYCANLKTCFLIDIIIMVTITTVVVLIVDETPYESVEMDEEWTPFFGELFGALNGLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPRGGSGEERLYHLGVRAGALGLMINSFVLGFFALVIEPVSRVVGGLRWVWGIVNVVFALCMGCTVVVSKAAERWRSVHGLRFPPLDVRAGAFTIFALLGIPLSVTFSVPFALASIFSSTSTAGQGLSLGILNLFIVIPQFIVSAVSGPIDAAFGGGNLPAFIMGGIAAFGSAICAMFLLPDPPPQSNNNALLTDDP 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34226962 34229812 + Sed0002671.1 Sed08g1987 723763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1987 496 SUPERFAMILY MFS general substrate transporter 20 485 IPR036259 -
Sed08g1987 496 PANTHER SUGAR TRANSPORTER 13 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed08g1987 496 CDD MFS_SLC45_SUC 23 477 - -
Sed08g1987 496 NCBIfam sucrose/proton symporter 20 483 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Sed08g1987 496 Gene3D MFS general substrate transporter like domains 19 245 IPR036259 -
Sed08g1987 496 Pfam MFS/sugar transport protein 35 280 - -
Sed08g1987 496 Gene3D MFS general substrate transporter like domains 306 490 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1987 K15378 - - csv:116401998 795.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1239 Sed-Chr1:9198091 Sed08g1987 Sed-Chr8:34226962 8.10E-127 dispersed
Sed08g1987 Sed-Chr8:34226962 Sed11g0820 Sed-Chr11:17748739 2.30E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 5 486 Sucrose Transporter Gene Family AT1G71880 58.3 3.4e-165 579.3
Sed01g1239 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 1.3e-135 481.1
Sed08g1987 . 12 485 Sucrose Transporter Gene Family AT1G22710 60.5 4.3e-176 615.5
Sed01g1239 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.4 8.5e-140 495.0
Sed11g0820 . 147 602 Sucrose Transporter Gene Family AT2G02860 68.6 4.7e-182 635.2
Sed10g1185 . 150 602 Sucrose Transporter Gene Family AT2G02860 68.7 2.9e-179 625.9
Sed11g0822 . 147 549 Sucrose Transporter Gene Family AT2G02860 67.5 8.2e-158 554.7
Sed11g0821 . 147 517 Sucrose Transporter Gene Family AT2G02860 65.0 5.0e-139 492.3
Sed01g1239 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 9.8e-205 710.7
Sed08g1987 . 19 486 Sucrose Transporter Gene Family AT1G09960 51.5 6.1e-130 462.2
Sed08g1987 . 13 485 Sucrose Transporter Gene Family AT1G71890 57.1 5.1e-161 565.5
Sed08g1987 . 13 480 Sucrose Transporter Gene Family AT5G43610 60.6 5.8e-170 595.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 6.2e-132 468.8
Sed08g1987 . 13 410 Sucrose Transporter Gene Family AT1G66570 58.8 3.0e-144 509.6
Sed08g1987 . 8 480 Sucrose Transporter Gene Family AT2G14670 60.8 5.6e-173 605.1
Sed01g1239 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 4.6e-135 479.2
Sed08g1987 . 15 480 Sucrose Transporter Gene Family AT5G06170 58.5 3.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60