Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1987 ATGGAGCATGGAGCTCTTGTGTCAAAGGACAAGGGGGACACAGATCCTCCGAGTTCCTACAAACAAATCATACTGGTCGCAGCCATTGCGGCTGGAATCCAATTCGGTTGGGCTCTTCAGCTCTCTTTACTAACCCCATACATCCAACAACTCGGCGTTCCGCACACGTGGTCCGCTTTCATTTGGCTCTGCGGCCCAATGTCGGGTCTCATAATTCAGCCCACGGTCGGTTACTATAGCGACCGCTGCACCTCTAGGTTCGGCCGCCGCCGTCCCTTCATAGTGGCCGGAGCCGGCTTCGTGGCCATGGCAGTATTCCTCATCGGATTCGCCGCCGACATCGGCCATTCGGCGGGCGACGAGCTAACGAAACCAACAAAACCAAGAGCGGTGGCGGTGTTCGTGGTCGGGTTCTGGGTGCTGGACGTGGCGAACAACATGTTGCAAGGACCATGCCGGGCGTTACTGGCGGACATGTCGTGCAACAATCAGAAGATGATGAGAGTTGCGAACGGATTCTTCTCCTTCTTCATGGGCGTGGGAAACGTGATGGGGTACGCGGCCGGATGCAACGCCACGCTGTACAAGGCGCTGCCGTTTACGGTCACCAAAGCGTGTGACGTGTACTGCGCCAATCTAAAAACGTGCTTCTTAATCGACATTATAATCATGGTCACCATCACGACGGTTGTGGTTTTGATCGTGGATGAGACGCCGTATGAGAGCGTGGAAATGGACGAGGAATGGACCCCGTTTTTCGGGGAGTTGTTTGGGGCGCTAAACGGGCTGTCGAAGCCCATGTGGATTTTGCTGCTCGTAACGGCGCTGAATTGGATCGGATGGTTTCCGTTTATAATGTACGATACGGACTGGATGGGGGCGGAGGTGTACGGGGGAAAACCGCGGGGCGGTTCGGGCGAGGAGCGGTTGTACCATCTGGGGGTTCGGGCCGGGGCGCTTGGGTTGATGATTAACTCGTTCGTGCTTGGGTTTTTCGCGCTGGTGATTGAACCGGTGAGCCGGGTTGTGGGTGGGCTCAGGTGGGTTTGGGGAATTGTGAATGTTGTGTTTGCGCTTTGTATGGGCTGTACTGTGGTTGTGAGTAAGGCGGCTGAACGGTGGAGATCTGTTCATGGGTTGAGATTTCCACCGTTGGATGTTAGGGCGGGTGCTTTCACTATCTTTGCGCTTTTGGGGATTCCTCTTTCGGTCACTTTTAGTGTTCCTTTTGCGCTTGCTTCCATCTTTTCTTCAACCTCCACGGCTGGTCAAGGGCTGTCATTGGGAATTCTGAACCTGTTCATAGTGATTCCACAGTTTATAGTGTCGGCAGTGAGTGGGCCGATTGATGCAGCCTTTGGAGGAGGAAACTTGCCCGCCTTCATAATGGGCGGAATCGCTGCCTTTGGAAGCGCAATCTGCGCCATGTTTCTCCTGCCCGACCCGCCGCCTCAATCCAATAATAATGCACTCTTAACCGATGACCCTTGA 1491 54.59 MEHGALVSKDKGDTDPPSSYKQIILVAAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSAFIWLCGPMSGLIIQPTVGYYSDRCTSRFGRRRPFIVAGAGFVAMAVFLIGFAADIGHSAGDELTKPTKPRAVAVFVVGFWVLDVANNMLQGPCRALLADMSCNNQKMMRVANGFFSFFMGVGNVMGYAAGCNATLYKALPFTVTKACDVYCANLKTCFLIDIIIMVTITTVVVLIVDETPYESVEMDEEWTPFFGELFGALNGLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPRGGSGEERLYHLGVRAGALGLMINSFVLGFFALVIEPVSRVVGGLRWVWGIVNVVFALCMGCTVVVSKAAERWRSVHGLRFPPLDVRAGAFTIFALLGIPLSVTFSVPFALASIFSSTSTAGQGLSLGILNLFIVIPQFIVSAVSGPIDAAFGGGNLPAFIMGGIAAFGSAICAMFLLPDPPPQSNNNALLTDDP 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34226962 34229812 + Sed0002671.1 Sed08g1987 723763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1987 496 SUPERFAMILY MFS general substrate transporter 20 485 IPR036259 -
Sed08g1987 496 PANTHER SUGAR TRANSPORTER 13 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Sed08g1987 496 CDD MFS_SLC45_SUC 23 477 - -
Sed08g1987 496 NCBIfam sucrose/proton symporter 20 483 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Sed08g1987 496 Gene3D MFS general substrate transporter like domains 19 245 IPR036259 -
Sed08g1987 496 Pfam MFS/sugar transport protein 35 280 - -
Sed08g1987 496 Gene3D MFS general substrate transporter like domains 306 490 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1239 Sed-Chr1:9198091 Sed08g1987 Sed-Chr8:34226962 8.10E-127 dispersed
Sed08g1987 Sed-Chr8:34226962 Sed11g0820 Sed-Chr11:17748739 2.30E-110 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1987 K15378 - csv:116401998 795.038