Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1988 ATGGAGATAGCAGAGCCCCAGCTAGCTTATTCAGCTGCAGGTTTTGATTCTGTCGTGTTCTTTTTTATGAACATGTTCTCTTCCACATCCTCATCAAAAGCTCTACCTTTTGATTCCCATATTGACAAGGATACTATGGAAGTTTATGGTGACTCCTCCTTGAATCCAAAAGATGATAACTTTATGTGTCAACTCGTGGATTCAATCCGATACCTTAATCGCCCTCATTTGGTTTCAGAAGAGGGAGAGATCGGAGTTTTTGGAGCCGAAAAGTACTTCAATGATGGAGTCGACGACATGAGTAGCCAAAAGTCAATCAACCCTAGAAGGTTACCATCTCAAAAGCACCTAGACAAACTTGTAGTAGTTGCCAATCATCAGCCAAAGCCAAGGCTTGGAACTCCGAGCATTGGTTCACAATCAAGTGGCGTCAATAGCCAAAGACCATTATTGAAGATTGACATAAATACAACAACAAATAATGGCAACGACAACGACAACGACAACAACAGTTTTTCCTTTGAGAAAAGGAATAATAATAAAAAGAGGTTTTTGTTGAGCACTCTTAGATATTGTATGTGTTATTCTTGGAACGATAAAAATGTCATTGACGTGAAGGAAGATGTCGGGGAAATTAGTTTCAGCAACGCAGTTAAAGCAAAGCCAGTTCGTCGTGAAAATAATAAAATAAAAGAAGATCAAGACCAAATGACGTCGCTTAAAGAGAAAGCTTTTAGCTTCCCAACAAAACCATTGAAATCGGTCCATTTCCAAGAAGAGGAAGTGGAGCCAAAGTCCCTAGAGGTTTTTGGCTCATCTATGGCAATAGAAAAGCTCAGAAACAAACCAACCAGCCTCAAGAAAAGGCTTGCAAAGCTGTCTTGGGATCACACAAACAACAACAACAATTCAGGAATATTGTTTTACAACGACGATGAAGTCAATAGCGATTGTAGCTCTGACTTATTCGAGATCGAAAGCCTTATAAAACAAACCAGTCCTTTTCAATCTCCATCACCATCGTGTTACGCCCCGAGCGAGGCTAGCGTCGAGTGGAGCGTGGTCACTGCTAGTGCGCTAGACTTCGACGAGGGAAGACCCTCCACCATGAGTCCTGCTAGAGTGGTGAAGCCTCCACTGTCGATGAGGAATAATTTCAACAAAGAGGTTATTGTTGTTAAGAAGTGA 1188 41.41 MEIAEPQLAYSAAGFDSVVFFFMNMFSSTSSSKALPFDSHIDKDTMEVYGDSSLNPKDDNFMCQLVDSIRYLNRPHLVSEEGEIGVFGAEKYFNDGVDDMSSQKSINPRRLPSQKHLDKLVVVANHQPKPRLGTPSIGSQSSGVNSQRPLLKIDINTTTNNGNDNDNDNNSFSFEKRNNNKKRFLLSTLRYCMCYSWNDKNVIDVKEDVGEISFSNAVKAKPVRRENNKIKEDQDQMTSLKEKAFSFPTKPLKSVHFQEEEVEPKSLEVFGSSMAIEKLRNKPTSLKKRLAKLSWDHTNNNNNSGILFYNDDEVNSDCSSDLFEIESLIKQTSPFQSPSPSCYAPSEASVEWSVVTASALDFDEGRPSTMSPARVVKPPLSMRNNFNKEVIVVKK 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34235198 34237905 - Sed0011365.1 Sed08g1988 723764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1988 395 MobiDBLite consensus disorder prediction 155 175 - -
Sed08g1988 395 Coils Coil 223 243 - -
Sed08g1988 395 MobiDBLite consensus disorder prediction 155 174 - -
Sed08g1988 395 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 51 363 IPR039615 GO:0009638(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1988 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1988 Sed-Chr8:34235198 Sed08g2061 Sed-Chr8:34861115 7.00E-09 dispersed
Sed11g1227 Sed-Chr11:28078621 Sed08g1988 Sed-Chr8:34235198 2.00E-95 wgd
Sed06g1534 Sed-Chr6:40094439 Sed08g1988 Sed-Chr8:34235198 1.70E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g904 . Blo16g01118 Bda01g02160 Bda11g01219 . Bpe10g00867 Bma14g01640 Bma15g00161 . Cmo18g01181 . Cma18g01157 . Car18g01066 Sed08g1988 Cpe09g00173 Cpe01g01461 Bhi07g01573 Tan04g1087 Cmetu10g1435 Lac13g0312 Hepe10g1735 . . Cla05g02448 Cam05g2634 Cec05g2667 Cco05g2705 Clacu05g2637 Cmu05g2491 Cre05g2604 . . Cone6ag0592 Cone9ag0595 Lsi04g00431 Csa05g02443 Chy10g00995 Cme10g00422 Blo06g00904 Blo11g00769 . Bda11g01219 Bpe11g01639 Bpe02g02346 Bma01g00095 Bma06g00683 . . . Cma04g01652 . Car04g01693 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013575 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 26