Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1995 ATGCAGCACCACCATCAACGCGTGAACCTCTGCCTCTTGCTTCGCATTTTGCCATTTCTCTTCGCCATTGCCGGCGCTGGACCAGATCTGAGCTCCGATCGAGCTTCTCTTCTGGCTCTCCGTGCTGCTCTGGCCGGCCGAACCGCCGAGCTTTGGAATGCGAGCGATGAAAGCCCCTGCTCTTGGACTGGAGTCAAATGCGAGGGAGGCCGCGTCGCTGTTCTTCGTTTGCCCGGCGTTTCGCTCTCCGGCCGGATTCCGGTCGGCGTTTTTGGACGTTTGACGAATCTTCGTACTCTCAGTCTCCGACTCAACGCGTTAACCGGCCAGCTTCCTTCGGATCTTGCTGCATGTACTAGTCTTCGCAACCTCTACTTGCAGGGTAATGGATTTTCTGGTCGTATTCCTGATTTTATTTTTCAATTTCGTGGCCTTGTTCGTCTTAATTTGGCTTCTAACAACTTTTCCGGCGGCATTGCGCCGGGTTTTGACAAACTGCGGCGCTTGAAGACTCTGTTCCTTGAGAACAATCGCCTTGTTGGCTCGATTCCGGAGTTTAATTTTCCAAATCTCGAGCAGTTCAATGTCTCCAATAACTTCCTTAACGGATCGATTCCCCGTCGTTTGCAGTCATTTGGCTCTACTTCCTTTCTAGGTAACGAACTTTGTGGACGTCCCCTTGAGATTTGCTCTAGAAATGTTATTGCTCCACTCACAGTGGATATCGACGTTAACGAGAACAAGAGAAAGAAAGCCCTGTCTGGGGCTGCCATAGCTGGGATTGTTCTGGGATCCATACTGTGTTTCTTTTTGTTTTGTGTGATTTTGATGTTTACTTGCGGGAGTAAGAACAGTAAAAAAACTAGTATTCTTGACATGACAACCCGTGATGATAATGATTTACTACGAGAGAAGCCGATTAGCGAAGAGAATGGGAGTTATGAGAATGGGCACATTGTAGCTGCGGCTACGGCAATGCCAGAGAATAGGAAAGGGGAAGTTAATGAAAACATTGCTGGTGGTGCTAAGAAGTTGGTGTTCTTCGGCAATGCCGCGAGGGTGTTCGATTTGGAGGATTTGTTGAGGGCTTCAGCGGAAGTGTTGGGTAAGGGAACCTTTGGAACAGCTTATAAAGCAGTGCTGGAGATAGGACCTGTTGTGGCTGTTAAGAGATTGAAGGATGTGACCATTCATGAGAGAGAGTTCAGGGAGAAAATTGAAGCAGTGGGAGCAATGGATCATGAAAATTTGGTTCCTCTTAAAGCATATTATTATAGCGTTGATGAGAAGCTTCTGGTCTATGATTACATGGCCATGGGAAGCTTATCTGCACTTTTGCATGGTAACAAAGGAGCTGGTAGGACTCCATTGAATTGGGAAATGAGGAGTGGCATTGCATGTGGAGTAGCCCGTGGCATCAAGTACTTACATTCTCAAGGCCCAAACGTTTCCCATGGAAACATAAAGTCTTCCAACATCTTGCTTGCCAAATCCTACGATGCCCGAGTCTCTGATTTCGGCCTAGCACAACTGGTTGGTCCAGCCTCCAGCCCTAACAGAGTGGCTGGGTATCGTGCACCGGAGGTGACAGATCCTCGTAAAGTATCACAAAAGGCAGATGTTTACAGCTTTGGTGTATTACTCTTGGAGCTATTGACAGGAAAAGCACCAAGTCATGCAGTGCTAAACGAGGAAGGCGTTGATCTACCGAGATGGGTGCAGTCAGTGGTGCAAGAGGAGTGGAGGTCGGAAGTTTTCGATGTCGAACTGCTGAGGCATGAGAGCATTGAGGAGGAGATGGTTCAAATGTTGGAGCTGGCTGTAGATTGTGCAGCACAACATCCAGATAAACGGCCTTCAATATATGAAGTGACAAGTCGCATCGAGGAGTTACGCCTTTCCTCTTCCTCCAACTCTAAGCCGCAGCCGCAACACAATGTTGATGAGTGA 1950 48.15 MQHHHQRVNLCLLLRILPFLFAIAGAGPDLSSDRASLLALRAALAGRTAELWNASDESPCSWTGVKCEGGRVAVLRLPGVSLSGRIPVGVFGRLTNLRTLSLRLNALTGQLPSDLAACTSLRNLYLQGNGFSGRIPDFIFQFRGLVRLNLASNNFSGGIAPGFDKLRRLKTLFLENNRLVGSIPEFNFPNLEQFNVSNNFLNGSIPRRLQSFGSTSFLGNELCGRPLEICSRNVIAPLTVDIDVNENKRKKALSGAAIAGIVLGSILCFFLFCVILMFTCGSKNSKKTSILDMTTRDDNDLLREKPISEENGSYENGHIVAAATAMPENRKGEVNENIAGGAKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGPVVAVKRLKDVTIHEREFREKIEAVGAMDHENLVPLKAYYYSVDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEMRSGIACGVARGIKYLHSQGPNVSHGNIKSSNILLAKSYDARVSDFGLAQLVGPASSPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPSHAVLNEEGVDLPRWVQSVVQEEWRSEVFDVELLRHESIEEEMVQMLELAVDCAAQHPDKRPSIYEVTSRIEELRLSSSSNSKPQPQHNVDE 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34311587 34314530 + Sed0021364.1 Sed08g1995 723771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1995 649 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Sed08g1995 649 ProSiteProfiles Protein kinase domain profile. 362 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1995 649 SUPERFAMILY L domain-like 53 217 - -
Sed08g1995 649 Pfam Leucine rich repeat 85 130 IPR001611 GO:0005515(InterPro)
Sed08g1995 649 CDD STKc_IRAK 368 631 - -
Sed08g1995 649 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Sed08g1995 649 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524(InterPro)
Sed08g1995 649 SUPERFAMILY Protein kinase-like (PK-like) 366 628 IPR011009 -
Sed08g1995 649 Gene3D Transferase(Phosphotransferase) domain 1 437 647 - -
Sed08g1995 649 Pfam Leucine Rich Repeat 145 166 IPR001611 GO:0005515(InterPro)
Sed08g1995 649 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Sed08g1995 649 Gene3D Phosphorylase Kinase; domain 1 333 436 - -
Sed08g1995 649 FunFam Probable inactive receptor kinase RLK902 30 187 - -
Sed08g1995 649 FunFam pollen receptor-like kinase 1 331 436 - -
Sed08g1995 649 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Sed08g1995 649 FunFam Probable inactive receptor kinase At1g48480 437 639 - -
Sed08g1995 649 Pfam Protein kinase domain 366 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1995 649 PANTHER OS05G0588300 PROTEIN 9 638 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2972 Sed-Chr1:26982619 Sed08g1995 Sed-Chr8:34311587 3.90E-23 dispersed
Sed07g2734 Sed-Chr7:42491058 Sed08g1995 Sed-Chr8:34311587 6.10E-49 dispersed
Sed08g1995 Sed-Chr8:34311587 Sed08g2770 Sed-Chr8:39295344 2.20E-201 dispersed
Sed08g1995 Sed-Chr8:34311587 Sed01g1779 Sed-Chr1:13018392 3.80E-214 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79660 PF00069 Pkinase 1.70E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1995 - - - 0.0