Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1996 ATGGTATTCAAAGGCAGGTTCTTCTCCTCCTCCAAGAAATCCGACTCTTCCAACCCCGACGGATCCAGCCCTCGATTCCTTGGTTCCAACTCGCCCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGAAGAACCCCAGATTCCCAATCCCAGTAGCAGCAGTAGTTTACGAGGTACGGTTCTGAAAGATGCTTCTTCCAGGATTAAGGATTGGAAACGGAAAGATACTCAAGCTCAATCGCCGATCGAGCCGCCGCCGCCGCCGCCGAAGCCGGACGCGATTTCGGGGTTGAAATTAGGGGCAACGGCCAAGAAATCGACGGATGGGAAGGATTTGGCCTCATCGGTTTCGCCCATTCTGGCATCGTCCCTTGGACTGAATAGGATTAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTTATGGGATTCAAAGGTGATAAGGGCTCATTGGGTTCTAGCAATCTTTCGAGGAATTGCGTCGATGGAAGCTCGGGCTCGAATTCGGGTTCGACGTGGTCGGGGTCTTCTTATAGTGGGGGGAAAAGAGAGGGGGCGAGTCAGAAACGATTTGGGTTTCCGGATAATGTTAAAAGCTATACTCGAAATGATAGCAATTCCGACAGTATGGCAACTGGTAATGCACCATCTACTGAACGGAGTCCAAGTTTGTTGGGACAATCTCGGTTACAGAACGCCGAATCATCCAGTGAATCTGGGCGTTATAAATCATCATGGACAGGTTCAGAAGGGTTAAGAAATTTAGATTTTTGTACGCCAGAGCCTTCTTATGATTGCGAAAATCCAAAGGAGTCTGAATCTCCACGCTTTCAAGCTATACTTCGTGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCGGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAATCACGTCGTTTAAACAATGTGGAGGAGATCTTAGTTATGATACGTGGAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGATTTGGCTGTTTTTGCTGCTGATCTGGTTGGAATTCTTGAGAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCCATGTCCTCTCCTGGCGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAGGAACATACTCCAGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTACTGCAGTTCCATAAAGAAAGCGGGTTAGCTGAGGATGAAAATGTTTTTCAACTTCGTCAGTCACGAAATCTGCATTCTGCTGAAAAACGCATTCCTCCAGCTATAGGAAGGGAAATGAAAAGTTCTAATGCTGCCAAGCCTTCTAAGACAGCTTCACCCAGGAAATCTTACAGCCAGGAGCAGCATGGCCTGAATTGGAGCAGAGAACATGATTTATTGCTTGGGAATACTGTCTTTACATCTTCCGATGATACTTCAAAGAGCTTGGTATCTCCTAGGAGTCCTACTGGCAGAGATCGGATGGCTTCTTGGAAAAAATTGCCTCCTCCAGCTGCAAAAAGTGTGAAGGAGCCTACTTTGAAGGATCAAGGTGATAGTAAGTTATCTTTGAACATGCCAAAAATCAGTATTGGTGTTTTTGAAACTGATTTCGGTGCTGGTAAGGTTTCTGAGCTTCCTCTGCCCAGAGATTCTCATGACCAGTCTACCAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCGACTGTATCTGATGAGAGTTCAATCATTTGTCGCATTTGTGAAGAAGAAATTCCTACTACAAATGTGGAAGATCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTTAGAATTTCTGAAACTCTAGAGAAGATGATCGAGTCCTTTACGCAAAAAGATTCTCAACATGTAGGAAGTCCAGATGTTGCAAAAGTTTCAAATTCTAGTATGACCGAAGAATCTGATATTTCCCCAAAACATAGTGATTGGTCCCGTAGGGGTTCAGAAGACATGCTCGATTGCTTCCATGAAACTGAAAATTCTGTTTTTATGGATGACTTAAAAAGTTTACCTTCGATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCCGATCAGGGTATGACAACATCATCAGCTGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAAACAGTCAGTTTGACTTGTTTTTAGTAGGGAAAGGTGCTTACTATGAACACGATGATCTTACACAGATTAGTGATCTTGCAGATATTGCACGCTGTTCAGCAAATACACCTCTGGGGGATGATTGCTCGATGCAATATCTGTTAACATGGCTTGAGGACTTGAGAGTTGTCATTACCCGTAGGAAGTTTAATGCACTGACAGTTGATACTTTTGGCTCTCGCATTGAAAAATTAATCCGGGAGAAGTATTTTCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAACAAGCACTGTTATTGATGAAGACGCTCCTCTTGAAGATGACTTTGTTCGTAGCTTAAGAACAAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTTCTGGCTAAAAAGAGGACAACAGGGGACCTGTTTGCAATAAAGGTTTTGAAGAAAGCTGATATGATACGGAAGAATGCCGTTGAAAGTATTCTGGCAGAACGTGATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTCTACTCATTTACTTGTCGTGAAAATTTATATCTCGTGATGGAGTATTTGAACGGAGGTGATCTTTACTCATTGTTGAGAAATTTAGGCTGCTTAGATGAAGAGGTTGCTCGTGTATATATCGCAGAAGTTGTTCTTGCTTTGGAGTATTTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTGTTAATAGCACACGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGCCTTATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGTACCACTCTTCTTGGGTATGATGAGCCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGCTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGCGCCACAGCTGATTGGTGGTCTGTAGGGATCATTTTATTTGAACTAATTGTTGGCATTCCACCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAGCATTCTCAACCGTAAGATCCCTTGGCCTCATATACCTGAAGAGATGAGCCATGATGCTCAAGATTTAATTGATCGATTACTGACTGAAGATCCTCACCAGCGACTTGGAGCTATAGGCGCACATGAGGTGAAGCAGCATAGATTCTTTAAAGATATTAACTGGGACACGCTTGCTCGACAAAAGGCGGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTCACAAGTCGCTACTCATGGAATCATTCAGACGATCATGGCTATCCACCCAGTGAACCTGAGGATTCAAGTGATGCTGACAGCTTAAGTGGTAACAGTAGTTTGAGCAATCGTCAGGAGGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCGTTCAGTAATTTCTCTTTCAAGAATCTTTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTGGAAGGATGATCCTCCCAATCATGATGCATAA 3915 43.37 MVFKGRFFSSSKKSDSSNPDGSSPRFLGSNSPRSDKKKNKSAAKEEPQIPNPSSSSSLRGTVLKDASSRIKDWKRKDTQAQSPIEPPPPPPKPDAISGLKLGATAKKSTDGKDLASSVSPILASSLGLNRIKTRSGPLPQESFMGFKGDKGSLGSSNLSRNCVDGSSGSNSGSTWSGSSYSGGKREGASQKRFGFPDNVKSYTRNDSNSDSMATGNAPSTERSPSLLGQSRLQNAESSSESGRYKSSWTGSEGLRNLDFCTPEPSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNVEEILVMIRGKFDKAKEEVNSDLAVFAADLVGILEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQEHTPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSAEKRIPPAIGREMKSSNAAKPSKTASPRKSYSQEQHGLNWSREHDLLLGNTVFTSSDDTSKSLVSPRSPTGRDRMASWKKLPPPAAKSVKEPTLKDQGDSKLSLNMPKISIGVFETDFGAGKVSELPLPRDSHDQSTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTTNVEDHSRICAVADRCDQKGISVNERLLRISETLEKMIESFTQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETENSVFMDDLKSLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRNSQFDLFLVGKGAYYEHDDLTQISDLADIARCSANTPLGDDCSMQYLLTWLEDLRVVITRRKFNALTVDTFGSRIEKLIREKYFQLCELVDDEKIDITSTVIDEDAPLEDDFVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDSILNRKIPWPHIPEEMSHDAQDLIDRLLTEDPHQRLGAIGAHEVKQHRFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHGYPPSEPEDSSDADSLSGNSSLSNRQEEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGWKDDPPNHDA 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34316100 34345533 - Sed0006423.1 Sed08g1996 723772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1996 1304 MobiDBLite consensus disorder prediction 471 490 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 152 185 - -
Sed08g1996 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1013 1025 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1996 1304 FunFam probable serine/threonine protein kinase IREH1 892 981 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 110 131 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 582 605 - -
Sed08g1996 1304 SMART serkin_6 894 1183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1996 1304 MobiDBLite consensus disorder prediction 65 79 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 1221 1260 - -
Sed08g1996 1304 ProSiteProfiles AGC-kinase C-terminal domain profile. 1184 1287 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1996 1304 Gene3D Phosphorylase Kinase; domain 1 892 1212 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 665 700 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 506 555 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 667 690 - -
Sed08g1996 1304 PANTHER SERINE/THREONINE-PROTEIN KINASE 601 1279 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed08g1996 1304 SUPERFAMILY Protein kinase-like (PK-like) 891 1231 IPR011009 -
Sed08g1996 1304 CDD STKc_MAST_like 900 1188 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 9 30 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 46 63 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 1 249 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 200 249 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 455 490 - -
Sed08g1996 1304 Pfam Protein kinase domain 895 1183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1996 1304 MobiDBLite consensus disorder prediction 734 756 - -
Sed08g1996 1304 MobiDBLite consensus disorder prediction 506 521 - -
Sed08g1996 1304 Gene3D Transferase(Phosphotransferase) domain 1 978 1201 - -
Sed08g1996 1304 ProSiteProfiles Protein kinase domain profile. 894 1183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1996 1304 MobiDBLite consensus disorder prediction 1233 1250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3666 Sed-Chr1:65839661 Sed08g1996 Sed-Chr8:34316100 4.20E-304 dispersed
Sed05g0572 Sed-Chr5:4171466 Sed08g1996 Sed-Chr8:34316100 1.30E-303 dispersed
Sed08g0180 Sed-Chr8:1003832 Sed08g1996 Sed-Chr8:34316100 1.90E-61 dispersed
Sed08g1996 Sed-Chr8:34316100 Sed08g1998 Sed-Chr8:34316100 0.00E+00 dispersed
Sed12g0872 Sed-Chr12:5407007 Sed08g1996 Sed-Chr8:34316100 1.70E-33 dispersed
Sed08g1996 Sed-Chr8:34316100 Sed08g1997 Sed-Chr8:34316100 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79661 PF00069 Pkinase 1.10E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1996 K08789 - csv:101214945 2241.08