Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2009 ATGATAGCCAAAACCACATCGGGCTGCCCGTCACTTCCATCATCGGAACCTTATCCTAATTTCTTAGAGAATAATGGAAACACCAACAAGAGAAAAAGAAGACCCGCGGGCACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCGAAAACGCTGCTCGAATCCGACCGCTACGTGTGCGAGATCTGCAACCAGGGCTTCCAGAGGGACCAGAACCTCCAGATGCACCGGCGCCGCCACAAGGTCCCCTGGAAGCTCTTGAAGAGGGAGAATCCTATCGTCCGCAAGAGGGTCTTCGTTTGCCCCGAGCCAACTTGCCTGCACCACGACCCGAGCCACGCCATCGGTGACCTCGTCGGTATCAAGAAGCATTTCCGCCGTAAGCACAGCAGCCACAAGCAGTGGGTTTGCGAAAAGTGCTCCAAAGCCTACGCGGTCCAGTCGGATTATAAGGCTCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGACTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCATCAAGATACTTGCAACATAGGGCAACTACGGCAAGAACCCCAAACCCTCCAGCCCGCATGTTTGTCCCGAACGGCTTCGAGTCCGAGCCCATCTAGCGACACGAACTTCAGCAGTGCACCCAACTGGCCTGCTCCCATAGCGCCACCCATTTTCGTAAAGGACGACTGCAACAACATCAACAACAATGGTTCGCTATATCATCACAATTTAGACCTCAAACTCTCCACTTCATCAAATGCAAATGATCACGTTGGTTGCTGGAAGAGATCATCAGAATTAGGGGGCAATGAGGATTCTTCAACCAATCTCCAGCTTTCGATCGGATCGTGCGATTTAGGGGATAAGAAAATCAACGGTGGGGTGTCGGAAGAAAAGACGAAAATGATGAAGTTGGATGTTGTAAGAGATGAGGCTCGGGAGGAGATGAGGGCGGCAATGGCGGAAAAGGCTTATGCGGAGGAAGCGAGGGAACAAGCCAAGCGAGAAATAGAAATGGCTGAGCGGGAATTCGCCAATGCAAGGACGATGAGGCAACAAGCACAAGCGGAGTTGGATAAAGCTGCAGCTCTTAAACGAGCTGCCATCAAACAAATCGACTCTACCATTCTTGAGATCACTTGTCAAGCTTGTCAAAAGAAATTTCAAGCCAAAACGACGACAACCATGACAACAACTACTTCACCGGCCACCGATCATGACAATTCAGTGGCGTTTAGTTATGTCTCCTCCGTCATTACAACAGAAGTGGATAAATATGCAGAAGGAGAACGAGTGCTGTGA 1320 51.06 MIAKTTSGCPSLPSSEPYPNFLENNGNTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRENPIVRKRVFVCPEPTCLHHDPSHAIGDLVGIKKHFRRKHSSHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNIGQLRQEPQTLQPACLSRTASSPSPSSDTNFSSAPNWPAPIAPPIFVKDDCNNINNNGSLYHHNLDLKLSTSSNANDHVGCWKRSSELGGNEDSSTNLQLSIGSCDLGDKKINGGVSEEKTKMMKLDVVRDEAREEMRAAMAEKAYAEEAREQAKREIEMAEREFANARTMRQQAQAELDKAAALKRAAIKQIDSTILEITCQACQKKFQAKTTTTMTTTTSPATDHDNSVAFSYVSSVITTEVDKYAEGERVL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34413558 34416622 + Sed0022680.1 Sed08g2009 723785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2009 439 MobiDBLite consensus disorder prediction 1 26 - -
Sed08g2009 439 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Sed08g2009 439 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Sed08g2009 439 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Sed08g2009 439 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Sed08g2009 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 387 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed08g2009 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Sed08g2009 439 Coils Coil 308 377 - -
Sed08g2009 439 MobiDBLite consensus disorder prediction 1 46 - -
Sed08g2009 439 FunFam protein indeterminate-domain 12-like 38 106 - -
Sed08g2009 439 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Sed08g2009 439 SMART c2h2final6 100 130 IPR013087 -
Sed08g2009 439 SMART c2h2final6 59 81 IPR013087 -
Sed08g2009 439 SMART c2h2final6 136 163 IPR013087 -
Sed08g2009 439 CDD ATP-synt_Fo_b 295 392 - -
Sed08g2009 439 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 185 - -
Sed08g2009 439 Gene3D Classic Zinc Finger 37 99 - -
Sed08g2009 439 Gene3D Classic Zinc Finger 121 198 - -
Sed08g2009 439 MobiDBLite consensus disorder prediction 199 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1788 Sed-Chr1:13117074 Sed08g2009 Sed-Chr8:34413558 1.20E-112 dispersed
Sed08g2009 Sed-Chr8:34413558 Sed08g2777 Sed-Chr8:39353235 2.10E-102 dispersed
Sed08g2009 Sed-Chr8:34413558 Sed08g2010 Sed-Chr8:34413558 1.50E-230 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39397 PF00096 zf-C2H2 0.0041 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2009 K25871 - csv:101209426 523.857