Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2009 | ATGATAGCCAAAACCACATCGGGCTGCCCGTCACTTCCATCATCGGAACCTTATCCTAATTTCTTAGAGAATAATGGAAACACCAACAAGAGAAAAAGAAGACCCGCGGGCACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCGAAAACGCTGCTCGAATCCGACCGCTACGTGTGCGAGATCTGCAACCAGGGCTTCCAGAGGGACCAGAACCTCCAGATGCACCGGCGCCGCCACAAGGTCCCCTGGAAGCTCTTGAAGAGGGAGAATCCTATCGTCCGCAAGAGGGTCTTCGTTTGCCCCGAGCCAACTTGCCTGCACCACGACCCGAGCCACGCCATCGGTGACCTCGTCGGTATCAAGAAGCATTTCCGCCGTAAGCACAGCAGCCACAAGCAGTGGGTTTGCGAAAAGTGCTCCAAAGCCTACGCGGTCCAGTCGGATTATAAGGCTCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGACTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCATCAAGATACTTGCAACATAGGGCAACTACGGCAAGAACCCCAAACCCTCCAGCCCGCATGTTTGTCCCGAACGGCTTCGAGTCCGAGCCCATCTAGCGACACGAACTTCAGCAGTGCACCCAACTGGCCTGCTCCCATAGCGCCACCCATTTTCGTAAAGGACGACTGCAACAACATCAACAACAATGGTTCGCTATATCATCACAATTTAGACCTCAAACTCTCCACTTCATCAAATGCAAATGATCACGTTGGTTGCTGGAAGAGATCATCAGAATTAGGGGGCAATGAGGATTCTTCAACCAATCTCCAGCTTTCGATCGGATCGTGCGATTTAGGGGATAAGAAAATCAACGGTGGGGTGTCGGAAGAAAAGACGAAAATGATGAAGTTGGATGTTGTAAGAGATGAGGCTCGGGAGGAGATGAGGGCGGCAATGGCGGAAAAGGCTTATGCGGAGGAAGCGAGGGAACAAGCCAAGCGAGAAATAGAAATGGCTGAGCGGGAATTCGCCAATGCAAGGACGATGAGGCAACAAGCACAAGCGGAGTTGGATAAAGCTGCAGCTCTTAAACGAGCTGCCATCAAACAAATCGACTCTACCATTCTTGAGATCACTTGTCAAGCTTGTCAAAAGAAATTTCAAGCCAAAACGACGACAACCATGACAACAACTACTTCACCGGCCACCGATCATGACAATTCAGTGGCGTTTAGTTATGTCTCCTCCGTCATTACAACAGAAGTGGATAAATATGCAGAAGGAGAACGAGTGCTGTGA | 1320 | 51.06 | MIAKTTSGCPSLPSSEPYPNFLENNGNTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRENPIVRKRVFVCPEPTCLHHDPSHAIGDLVGIKKHFRRKHSSHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNIGQLRQEPQTLQPACLSRTASSPSPSSDTNFSSAPNWPAPIAPPIFVKDDCNNINNNGSLYHHNLDLKLSTSSNANDHVGCWKRSSELGGNEDSSTNLQLSIGSCDLGDKKINGGVSEEKTKMMKLDVVRDEAREEMRAAMAEKAYAEEAREQAKREIEMAEREFANARTMRQQAQAELDKAAALKRAAIKQIDSTILEITCQACQKKFQAKTTTTMTTTTSPATDHDNSVAFSYVSSVITTEVDKYAEGERVL | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34413558 | 34416622 | + | Sed0022680.1 | Sed08g2009 | 723785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2009 | 439 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed08g2009 | 439 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 135 | 159 | - | - | |
Sed08g2009 | 439 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 96 | 130 | - | - | |
Sed08g2009 | 439 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 156 | IPR036236 | - | |
Sed08g2009 | 439 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 61 | 81 | IPR013087 | - | |
Sed08g2009 | 439 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 387 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed08g2009 | 439 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 59 | 81 | IPR013087 | - | |
Sed08g2009 | 439 | Coils | Coil | 308 | 377 | - | - | |
Sed08g2009 | 439 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Sed08g2009 | 439 | FunFam | protein indeterminate-domain 12-like | 38 | 106 | - | - | |
Sed08g2009 | 439 | Pfam | Zinc finger, C2H2 type | 59 | 81 | IPR013087 | - | |
Sed08g2009 | 439 | SMART | c2h2final6 | 100 | 130 | IPR013087 | - | |
Sed08g2009 | 439 | SMART | c2h2final6 | 59 | 81 | IPR013087 | - | |
Sed08g2009 | 439 | SMART | c2h2final6 | 136 | 163 | IPR013087 | - | |
Sed08g2009 | 439 | CDD | ATP-synt_Fo_b | 295 | 392 | - | - | |
Sed08g2009 | 439 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 163 | 185 | - | - | |
Sed08g2009 | 439 | Gene3D | Classic Zinc Finger | 37 | 99 | - | - | |
Sed08g2009 | 439 | Gene3D | Classic Zinc Finger | 121 | 198 | - | - | |
Sed08g2009 | 439 | MobiDBLite | consensus disorder prediction | 199 | 220 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1788 | Sed-Chr1:13117074 | Sed08g2009 | Sed-Chr8:34413558 | 1.20E-112 | dispersed | |
Sed08g2009 | Sed-Chr8:34413558 | Sed08g2777 | Sed-Chr8:39353235 | 2.10E-102 | dispersed | |
Sed08g2009 | Sed-Chr8:34413558 | Sed08g2010 | Sed-Chr8:34413558 | 1.50E-230 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39397 | PF00096 | zf-C2H2 | 0.0041 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2009 | K25871 | - | csv:101209426 | 523.857 |