Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2017 ATGTTCAAGTTATTTACGTTATTTTTAGAAATTGTTTCAGGTTGGGCGAAGAACTTCTTAGCTGGAGATAATTGCTACCTTTTTCAGTTCACCATCAAGATTGCCGCACTGAAAATGGATGAACCCACTTTGAGGAAAAAGGTTCAAAGGAAAGCAAAAATCAGACGTTTCGACATCAAACTAGATGCTCTGTCCGAAATTGTTTCCTTTGCCTCTCGCTTTAGTGGCTGTGAAGATGACGCTATAGAGTTGGTTCTCGACAATCTCCATGATGAATCCTTGCAGTCTTCAATAATAGACAAGGATGTGGTGCATCGGGTTGTCAGCATCCTACTTGCAGCTGATGATGTGGGAGAAGAAAGTCTTGATACCACTACTAGTACATCCGCTCTTTGCATAGTTAACGCTTTTGATATCTCCAAGTTTCGTTATGATCACATCAAGAAGATCTTCCACCAGCACACAGGAAATCTTCCAATTCATGGGGATGCTTCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTCTTGCTTTCTCAAAGGCTCTCCCGAGATCAGCATTTCTCGAAACCTGCTTTTGACACTGGCATTTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCTATCTCTGGTGTCGAAAACAGGGAGGAAATGGGTCATGGGAGTGATCTCTCAGATGGAGGATGGCCACTTCTACTTGGAGGACCTTAGTGCCTCTGTGGAAATTAGTTTATCTAGTGCTAAGATAACTACAGGTCTATTTACAGAGAACACCATAGTTGTTGCAGAAGGAGAGATGCTCGTGAGTGGCATTTTCCAGGTTATCACATGTGGATTTCCTCCATTAGAGGACAGGGACACGTCTCTTAAATTACTAGCAGGCCAAGACTTCTTTGGAGGTGGTGCTCTAACTAAAGAGGAGACTCTCAGGCTTGCAGATCTTGAAAAGAGAGCCGTGAATGATATGTTTGTCATACTCTCTGACGTTTGGTTGGATAGTGAAGAGGTCATGGGAAAACTGGAGACAATACTTGATGGGTTTGAGAATGTCGAAGTAGTTCCTTCCTTATTCGTTTTGATGGGGAATTTTTGTTCTCGTCCATTTAATCTTGCTTTCAATTCTTTCTCAAGTCTCCGATCACAATTTGGTAAGCTAGGAAAAATGATAGCAGCTCATCCACGATTAAAAGAGCATAGCAAGTTTCTATTTATTCCTGGTCCAGATGATGCAGGCCCATCAACCGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTTACTGAAGAGCTTCAGATGCACGTCCCAAATGCCATCTTCTCAAGTAACCCTTGCAGGGTCAGGTTCTACACCCAGGAAATTGTATTTTTCCGACAGGACCTACTTTATAGAATGCGTCGTTCCTGTCTCATGCCGCCTTCTACAGAAGAAACCAGTGATCCTTTTGAGCATCTTGTTGCAACCATAGCTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGATATTCAACCAATTATCTGGAATTATGACCACTGTCTTCATCTTTATCCAACTCCTCATGTGATAGTTTTGGGGGATAGAAGCAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTCAACCCTGGATCCTTTGCAAATGACTGCACTTTCGTGGCATATCGTCCTTTCAATCAAGAAGTTGAATTATCTGCCTTGTGA 1701 42.21 MFKLFTLFLEIVSGWAKNFLAGDNCYLFQFTIKIAALKMDEPTLRKKVQRKAKIRRFDIKLDALSEIVSFASRFSGCEDDAIELVLDNLHDESLQSSIIDKDVVHRVVSILLAADDVGEESLDTTTSTSALCIVNAFDISKFRYDHIKKIFHQHTGNLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGISHFGSCEISPILSLVSKTGRKWVMGVISQMEDGHFYLEDLSASVEISLSSAKITTGLFTENTIVVAEGEMLVSGIFQVITCGFPPLEDRDTSLKLLAGQDFFGGGALTKEETLRLADLEKRAVNDMFVILSDVWLDSEEVMGKLETILDGFENVEVVPSLFVLMGNFCSRPFNLAFNSFSSLRSQFGKLGKMIAAHPRLKEHSKFLFIPGPDDAGPSTVLPRCALPKYFTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLMPPSTEETSDPFEHLVATIAHQSHLCPLPLDIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFANDCTFVAYRPFNQEVELSAL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34459730 34466947 - Sed0010232.1 Sed08g2017 723793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2017 566 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 43 566 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0006261(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0042276(PANTHER)
Sed08g2017 566 PIRSF DNA_pol_epsilon_2 38 566 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
Sed08g2017 566 Gene3D - 39 110 - -
Sed08g2017 566 Pfam DNA polymerase alpha/epsilon subunit B 324 529 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed08g2017 566 Gene3D - 334 561 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2017 K02325 - csv:101207444 925.62