Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2018 ATGGCTTTAACGACGGTTGCAGACTCCAGAGACTCAGTGAACTGCACTTTTGGTTCAAGATATGTCCGGTCACTTCCCCCCAAGTTCAAACTCGGGCCGAATCCGATACCGAAGGATGCGGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGCACTCCCAGGCTGAACTTGGCCTCTTTTGTCACAACTTGGATGGAGCCTGAGTGTGACAATCTCATCATGGCTTCTCTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACTACTGAGCTGCAGAATCGATGTGTGAACATAATAGCTCGCCTATTCAATGCCCCCATTGGAGAAGAAGAGGCAGCAATTGGTGTTGGAACTATGGGATCATCAGAGGCCATAATGCTGGCAGGCCTTGCTTTTAAGAGGAAATGGCAGCACAAAAGAAAATCTCAAGGCAAACCCTTTGATAAACCCAACATAGTCACCGGAGCTAATGTGCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAACTTTCTGAAGGGTTCTATGTAATGGACCCCGTGAAGGCTGTGGAACTGGTGGATGAGAATACCATTTGTGTTGCAGCAATTTTGGGATCCACTTTAACAGGGGAGTTTGAGGATGTAAAACTGCTTAATGATCTGCTGTGTAAGAAGAACAAGGAAACTGGTTGGGAGACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTCATAGCGCCGTTCCTTTATCCCGAGCTCGAGTGGGATTTTCGGTTGCCTTTGGTGAAGAGCATCAATGTAAGTGGCCATAAGTATGGGCTTGTTTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTTCCTGATGAGCTTGTTTTTCATATTAACTATCTTGGTTCTGATCAACCTACCTTCACTCTTAACTTCTCAAAAGGTTCTAGTCAAATCATTGCTCAGTATTATCAATTTATAAGGCTTGGATTTGAGGGATATAAAAATGTGATGGAGAACTGCAAGGAGAATGCAAGAGTGCTGAGAGAGGGAATAGAGAAAATGGGAAGGTTTGAGGTAGTTTCCAAGGACATTGGAGTACCCCTAGTAGCCTTCACTCTCAAAGACAGCACCAAACACACCGTGTTCGAGATATCCGAGAACCTGAGGAGGTTCGGGTGGATCGTCCCAGCTTACACGATGCCTCCGAATGCCCAGCACATCGCGGTGCTTCGAGTGGTGATCAGGGAAGACTTCAGCCGCAGTTTGGCCGAGAGACTGATCGCCGATATCGGCAAAGTCCTAAAGGATGTCGAGGCTCTGCCAATTCGGGTGGCTGTGAAAGCTGGCATTGAAGGTGATGGGGAAATTACAAAGCATGTGAAGAAGAGTGATGTGGAGATTGAGGAGGAAATAACTTCATATTGGAAGAGGCTTGTGGATGGCAAGAGAACTGGTGCCTGCTAG 1482 46.63 MALTTVADSRDSVNCTFGSRYVRSLPPKFKLGPNPIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNIIARLFNAPIGEEEAAIGVGTMGSSEAIMLAGLAFKRKWQHKRKSQGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNDLLCKKNKETGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLREGIEKMGRFEVVSKDIGVPLVAFTLKDSTKHTVFEISENLRRFGWIVPAYTMPPNAQHIAVLRVVIREDFSRSLAERLIADIGKVLKDVEALPIRVAVKAGIEGDGEITKHVKKSDVEIEEEITSYWKRLVDGKRTGAC 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34467889 34472060 - Sed0011623.1 Sed08g2018 723794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2018 493 CDD DOPA_deC_like 58 436 - -
Sed08g2018 493 FunFam Glutamate decarboxylase 65 359 - -
Sed08g2018 493 FunFam Glutamate decarboxylase 360 447 - -
Sed08g2018 493 SUPERFAMILY PLP-dependent transferases 12 444 IPR015424 -
Sed08g2018 493 FunFam Glutamate decarboxylase 5 64 - -
Sed08g2018 493 NCBIfam glutamate decarboxylase 16 443 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Sed08g2018 493 Gene3D - 65 359 IPR015421 -
Sed08g2018 493 Gene3D - 1 64 - -
Sed08g2018 493 PANTHER GLUTAMATE DECARBOXYLASE 9 489 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Sed08g2018 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 380 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Sed08g2018 493 Gene3D - 360 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1065 Sed-Chr3:6465532 Sed08g2018 Sed-Chr8:34467889 4.60E-215 dispersed
Sed03g1066 Sed-Chr3:6476019 Sed08g2018 Sed-Chr8:34467889 3.50E-156 dispersed
Sed08g2018 Sed-Chr8:34467889 Sed03g0897 Sed-Chr3:5565001 3.00E-227 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2018 K01580 - csv:101210903 901.353