Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2020 | ATGGAGTTTGGCGGTGGCTCCGGTTGGGAAAACGATTCCTCGTCCGACCCGCAACGTAGGAAGAAACGGTACCATCGTCACACTGCCAATCAGATTCAGAGGCTTGAGGCATTGTTCAAAGAGTGCCCTCATCCTGATGAGAAGCAGAGATTGCAGTTGAGCAGAGAGCTGGGTTTGGCTCCTCGCCAAATCAAGTTTTGGTTCCAAAACAGAAGGACCCAGATGAAGGCTCAACATGAAAGGGCTGATAATAGTGCACTTCGAGCCGAGAACGACAAGATTCGATGTGAGAATATAGCCATTAGAGAGGCACTCAAGAATGTCATCTGCCCTTCGTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCACATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAACACATTGGGAGGCCAATCTCTCAACTACCACCCATTCAGCCTTCACATTTTTCTTCATTAGAGCTATCCATGGGTGGTAGTTTTGCCTCCCAAGAAATGGGATGCCCTTCACTTGATCTTGATTTACTTCCTGCTAGTTCTCCTTCAAGTGTTCCTAGTTTGCCGTACCACCACCCGATTCATTTCTCCAATGTCGATAGGACCCTAATGACTGAAGTTGCCACAAATGCCATGGGACAGCTGCTCCGGCTTTCCCAAACTAATGAACCATTCTGGATGAAGTCATCGACTGATGGACGCGATGTCCTCGACCTTGAAACTTATGAACAGGCTTTCCCAAGACCCAACACTCCCTTGAAGAATTTCCATTTTCGCACCGAAGCGTCTAGAGATTCAGGGGTGGTGATCATGGATAGTGCATCGTTGATTGACATGTTTGTCGACTCGAACAAATGGGCAGAGTTGTTTCCCACAATTGTATCCATTGCAAGAACAATTGAAGTTATATCATCCGGGATGTTGGGAAGTCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCAACTTTCCCCATTGGTTCCGACTCGCCACTTTTACGTCCTTCGATATTGTCAACAAATTGAACATGGAATATGGGCTATAGTTGATGTTTCATATAACATCCCCAGAGAAAACCAAATAGTTTTGCATTCTCAATGTCACTGCTTTCCCTCGGGCTGCTTGATCCAGGACATGCCCAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAGGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCCGAAAGGTTTGCCTGTTTAATGAATACTGGTAGTTCAAGTCAGGATCCTGGTGGAGTTATCCCATCACCAGAGGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTCTGTGCTAGCATCAGTGCATCTCATGGCCATCGTTGGACGACCCTTTCAGGGACGAATGAGGTCGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAGCCTAATGGTGTGGTTCTCAGTGCAGCTACAACCATATGGCTCCCTGTTTCTCCTCAAACAATTTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTGGGACGTTCTCTCGGATGGCAATCCGGTTCAAGAGGTTGCACATATAACAAATGGATCGCATCCAGGGAATTGCATATCTATTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTACAAGAGAGTTGCATAGACTCATCTGGGTCACTTGTTGTTTACTGCCCTGTGGATCTACCAGCCATGAATATTGCAATGAGTGGGGAGGACCCATCAACTATTCCCTTGCTACCTTCCGGATTCACAATTTTACCCGACGGCCGACAGGACCAAGGAGAGGGCACGTCGAGCAGCTCCGACGTGCACAGCAGGTCGGGCGGCTCACTCGTAACAGTAGCATTTCAGATACTAGTAAGCAGTTTGCCATCCGGGAAGCTGAATTTGGAGTCGGTGACGACGGTTAACAACCTCATCAGCACAACCATCCACCAAATCAAGACAGCCTTAAATTGCCATAGTTCCTGA | 2124 | 46.94 | MEFGGGSGWENDSSSDPQRRKKRYHRHTANQIQRLEALFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKHIGRPISQLPPIQPSHFSSLELSMGGSFASQEMGCPSLDLDLLPASSPSSVPSLPYHHPIHFSNVDRTLMTEVATNAMGQLLRLSQTNEPFWMKSSTDGRDVLDLETYEQAFPRPNTPLKNFHFRTEASRDSGVVIMDSASLIDMFVDSNKWAELFPTIVSIARTIEVISSGMLGSHNGSLQLMYLELQQLSPLVPTRHFYVLRYCQQIEHGIWAIVDVSYNIPRENQIVLHSQCHCFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMNTGSSSQDPGGVIPSPEGKRSMMKLAQRMVSNFCASISASHGHRWTTLSGTNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNCISILRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNIAMSGEDPSTIPLLPSGFTILPDGRQDQGEGTSSSSDVHSRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTIHQIKTALNCHSS | 707 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34486103 | 34490142 | - | Sed0013497.1 | Sed08g2020 | 723796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2020 | 707 | SUPERFAMILY | Bet v1-like | 214 | 446 | - | - | |
Sed08g2020 | 707 | CDD | homeodomain | 20 | 79 | IPR001356 | GO:0003677(InterPro) | |
Sed08g2020 | 707 | Pfam | START domain | 221 | 444 | IPR002913 | GO:0008289(InterPro) | |
Sed08g2020 | 707 | SMART | HOX_1 | 19 | 82 | IPR001356 | GO:0003677(InterPro) | |
Sed08g2020 | 707 | ProSiteProfiles | 'Homeobox' domain profile. | 18 | 78 | IPR001356 | GO:0003677(InterPro) | |
Sed08g2020 | 707 | MobiDBLite | consensus disorder prediction | 638 | 657 | - | - | |
Sed08g2020 | 707 | SMART | START_1 | 220 | 445 | IPR002913 | GO:0008289(InterPro) | |
Sed08g2020 | 707 | SUPERFAMILY | Homeodomain-like | 13 | 82 | IPR009057 | - | |
Sed08g2020 | 707 | FunFam | Homeobox-leucine zipper protein HDG1 | 8 | 94 | - | - | |
Sed08g2020 | 707 | Gene3D | - | 219 | 445 | IPR023393 | - | |
Sed08g2020 | 707 | SUPERFAMILY | Bet v1-like | 466 | 699 | - | - | |
Sed08g2020 | 707 | MobiDBLite | consensus disorder prediction | 642 | 657 | - | - | |
Sed08g2020 | 707 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed08g2020 | 707 | CDD | START_ArGLABRA2_like | 217 | 444 | - | - | |
Sed08g2020 | 707 | ProSitePatterns | 'Homeobox' domain signature. | 53 | 76 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed08g2020 | 707 | Gene3D | - | 9 | 94 | - | - | |
Sed08g2020 | 707 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 11 | 704 | IPR042160 | - | |
Sed08g2020 | 707 | ProSiteProfiles | START domain profile. | 211 | 448 | IPR002913 | GO:0008289(InterPro) | |
Sed08g2020 | 707 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 220 | 444 | - | - | |
Sed08g2020 | 707 | Pfam | Homeodomain | 21 | 76 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4133 | Sed-Chr1:70128635 | Sed08g2020 | Sed-Chr8:34486103 | 1.90E-186 | dispersed | |
Sed05g2729 | Sed-Chr5:38643764 | Sed08g2020 | Sed-Chr8:34486103 | 4.10E-201 | dispersed | |
Sed08g2020 | Sed-Chr8:34486103 | Sed09g0079 | Sed-Chr9:618782 | 4.70E-189 | dispersed | |
Sed08g2020 | Sed-Chr8:34486103 | Sed08g2021 | Sed-Chr8:34486103 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39400 | PF01852 | START | 8.20E-43 | CL0209 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2020 | K09338 | - | csv:101215660 | 1290.02 |