Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2020 ATGGAGTTTGGCGGTGGCTCCGGTTGGGAAAACGATTCCTCGTCCGACCCGCAACGTAGGAAGAAACGGTACCATCGTCACACTGCCAATCAGATTCAGAGGCTTGAGGCATTGTTCAAAGAGTGCCCTCATCCTGATGAGAAGCAGAGATTGCAGTTGAGCAGAGAGCTGGGTTTGGCTCCTCGCCAAATCAAGTTTTGGTTCCAAAACAGAAGGACCCAGATGAAGGCTCAACATGAAAGGGCTGATAATAGTGCACTTCGAGCCGAGAACGACAAGATTCGATGTGAGAATATAGCCATTAGAGAGGCACTCAAGAATGTCATCTGCCCTTCGTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCACATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAACACATTGGGAGGCCAATCTCTCAACTACCACCCATTCAGCCTTCACATTTTTCTTCATTAGAGCTATCCATGGGTGGTAGTTTTGCCTCCCAAGAAATGGGATGCCCTTCACTTGATCTTGATTTACTTCCTGCTAGTTCTCCTTCAAGTGTTCCTAGTTTGCCGTACCACCACCCGATTCATTTCTCCAATGTCGATAGGACCCTAATGACTGAAGTTGCCACAAATGCCATGGGACAGCTGCTCCGGCTTTCCCAAACTAATGAACCATTCTGGATGAAGTCATCGACTGATGGACGCGATGTCCTCGACCTTGAAACTTATGAACAGGCTTTCCCAAGACCCAACACTCCCTTGAAGAATTTCCATTTTCGCACCGAAGCGTCTAGAGATTCAGGGGTGGTGATCATGGATAGTGCATCGTTGATTGACATGTTTGTCGACTCGAACAAATGGGCAGAGTTGTTTCCCACAATTGTATCCATTGCAAGAACAATTGAAGTTATATCATCCGGGATGTTGGGAAGTCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCAACTTTCCCCATTGGTTCCGACTCGCCACTTTTACGTCCTTCGATATTGTCAACAAATTGAACATGGAATATGGGCTATAGTTGATGTTTCATATAACATCCCCAGAGAAAACCAAATAGTTTTGCATTCTCAATGTCACTGCTTTCCCTCGGGCTGCTTGATCCAGGACATGCCCAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAGGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCCGAAAGGTTTGCCTGTTTAATGAATACTGGTAGTTCAAGTCAGGATCCTGGTGGAGTTATCCCATCACCAGAGGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTCTGTGCTAGCATCAGTGCATCTCATGGCCATCGTTGGACGACCCTTTCAGGGACGAATGAGGTCGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAGCCTAATGGTGTGGTTCTCAGTGCAGCTACAACCATATGGCTCCCTGTTTCTCCTCAAACAATTTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTGGGACGTTCTCTCGGATGGCAATCCGGTTCAAGAGGTTGCACATATAACAAATGGATCGCATCCAGGGAATTGCATATCTATTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTACAAGAGAGTTGCATAGACTCATCTGGGTCACTTGTTGTTTACTGCCCTGTGGATCTACCAGCCATGAATATTGCAATGAGTGGGGAGGACCCATCAACTATTCCCTTGCTACCTTCCGGATTCACAATTTTACCCGACGGCCGACAGGACCAAGGAGAGGGCACGTCGAGCAGCTCCGACGTGCACAGCAGGTCGGGCGGCTCACTCGTAACAGTAGCATTTCAGATACTAGTAAGCAGTTTGCCATCCGGGAAGCTGAATTTGGAGTCGGTGACGACGGTTAACAACCTCATCAGCACAACCATCCACCAAATCAAGACAGCCTTAAATTGCCATAGTTCCTGA 2124 46.94 MEFGGGSGWENDSSSDPQRRKKRYHRHTANQIQRLEALFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKHIGRPISQLPPIQPSHFSSLELSMGGSFASQEMGCPSLDLDLLPASSPSSVPSLPYHHPIHFSNVDRTLMTEVATNAMGQLLRLSQTNEPFWMKSSTDGRDVLDLETYEQAFPRPNTPLKNFHFRTEASRDSGVVIMDSASLIDMFVDSNKWAELFPTIVSIARTIEVISSGMLGSHNGSLQLMYLELQQLSPLVPTRHFYVLRYCQQIEHGIWAIVDVSYNIPRENQIVLHSQCHCFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMNTGSSSQDPGGVIPSPEGKRSMMKLAQRMVSNFCASISASHGHRWTTLSGTNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNCISILRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNIAMSGEDPSTIPLLPSGFTILPDGRQDQGEGTSSSSDVHSRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTIHQIKTALNCHSS 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34486103 34490142 - Sed0013497.1 Sed08g2020 723796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2020 707 SUPERFAMILY Bet v1-like 214 446 - -
Sed08g2020 707 CDD homeodomain 20 79 IPR001356 GO:0003677(InterPro)
Sed08g2020 707 Pfam START domain 221 444 IPR002913 GO:0008289(InterPro)
Sed08g2020 707 SMART HOX_1 19 82 IPR001356 GO:0003677(InterPro)
Sed08g2020 707 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Sed08g2020 707 MobiDBLite consensus disorder prediction 638 657 - -
Sed08g2020 707 SMART START_1 220 445 IPR002913 GO:0008289(InterPro)
Sed08g2020 707 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
Sed08g2020 707 FunFam Homeobox-leucine zipper protein HDG1 8 94 - -
Sed08g2020 707 Gene3D - 219 445 IPR023393 -
Sed08g2020 707 SUPERFAMILY Bet v1-like 466 699 - -
Sed08g2020 707 MobiDBLite consensus disorder prediction 642 657 - -
Sed08g2020 707 MobiDBLite consensus disorder prediction 1 27 - -
Sed08g2020 707 CDD START_ArGLABRA2_like 217 444 - -
Sed08g2020 707 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed08g2020 707 Gene3D - 9 94 - -
Sed08g2020 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 704 IPR042160 -
Sed08g2020 707 ProSiteProfiles START domain profile. 211 448 IPR002913 GO:0008289(InterPro)
Sed08g2020 707 FunFam Homeobox-leucine zipper protein GLABRA 2 220 444 - -
Sed08g2020 707 Pfam Homeodomain 21 76 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4133 Sed-Chr1:70128635 Sed08g2020 Sed-Chr8:34486103 1.90E-186 dispersed
Sed05g2729 Sed-Chr5:38643764 Sed08g2020 Sed-Chr8:34486103 4.10E-201 dispersed
Sed08g2020 Sed-Chr8:34486103 Sed09g0079 Sed-Chr9:618782 4.70E-189 dispersed
Sed08g2020 Sed-Chr8:34486103 Sed08g2021 Sed-Chr8:34486103 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39400 PF01852 START 8.20E-43 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2020 K09338 - csv:101215660 1290.02