Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2021 ATGGAGTTTGGCGGTGGCTCCGGTTGGGAAAACGATTCCTCGTCCGACCCGCAACGTAGGAAGAAACGGTACCATCGTCACACTGCCAATCAGATTCAGAGGCTTGAGGCATTGTTCAAAGAGTGCCCTCATCCTGATGAGAAGCAGAGATTGCAGTTGAGCAGAGAGCTGGGTTTGGCTCCTCGCCAAATCAAGTTTTGGTTCCAAAACAGAAGGACCCAGATGAAGGCTCAACATGAAAGGGCTGATAATAGTGCACTTCGAGCCGAGAACGACAAGATTCGATGTGAGAATATAGCCATTAGAGAGGCACTCAAGAATGTCATCTGCCCTTCGTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCACATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAACACATTGGGAGGCCAATCTCTCAACTACCACCCATTCAGCCTTCACATTTTTCTTCATTAGAGCTATCCATGGGTGGTAGTTTTGCCTCCCAAGAAATGGGATGCCCTTCACTTGATCTTGATTTACTTCCTGCTAGTTCTCCTTCAAGTGTTCCTAGTTTGCCGTACCACCACCCGATTCATTTCTCCAATGTCGATAGGACCCTAATGACTGAAGTTGCCACAAATGCCATGGGACAGCTGCTCCGGCTTTCCCAAACTAATGAACCATTCTGGATGAAGTCATCGACTGATGGACGCGATGTCCTCGACCTTGAAACTTATGAACAGGCTTTCCCAAGACCCAACACTCCCTTGAAGAATTTCCATTTTCGCACCGAAGCGTCTAGAGATTCAGGGGTGGTGATCATGGATAGTGCATCGTTGATTGACATGTTTGTCGACTCGAACAAATGGGCAGAGTTGTTTCCCACAATTGTATCCATTGCAAGAACAATTGAAGTTATATCATCCGGGATGTTGGGAAGTCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCAACTTTCCCCATTGGTTCCGACTCGCCACTTTTACGTCCTTCGATATTGTCAACAAATTGAACATGGAATATGGGCTATAGTTGATGTTTCATATAACATCCCCAGAGAAAACCAAATAGTTTTGCATTCTCAATGTCACTGCTTTCCCTCGGGCTGCTTGATCCAGGACATGCCCAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAGGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCCGAAAGGTTTGCCTGTTTAATGAATACTGGTAGTTCAAGTCAGGATCCTGGTGGAGTTATCCCATCACCAGAGGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTCTGTGCTAGCATCAGTGCATCTCATGGCCATCGTTGGACGACCCTTTCAGGGACGAATGAGGTCGGTGTTCGTGTCACAGTGCATAAAAGCATGGATCCTGGCCAGCCTAATGGTGTGGTTCTCAGTGCAGCTACAACCATATGGCTCCCTGTTTCTCCTCAAACAATTTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTTCAATGCTTCATCAGTGGGACGTTCTCTCGGATGGCAATCCGGTTCAAGAGGTTGCACATATAACAAATGGATCGCATCCAGGGAATTGCATATCTATTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTACAAGAGAGTTGCATAGACTCATCTGGGTCACTTGTTGTTTACTGCCCTGTGGATCTACCAGCCATGAATATTGCAATGAGTGGGGAGGACCCATCAACTATTCCCTTGCTACCTTCCGGATTCACAATTTTACCCGACGGCCGACAGGACCAAGGAGAGGGCACGTCGAGCAGCTCCGACGTGCACAGCAGGTCGGGCGGCTCACTCGTAACAGTAGCATTTCAGATACTAGTAAGCAGTTTGCCATCCGGGAAGCTGAATTTGGAGTCGGTGACGACGGTTAA 2079 46.95 MEFGGGSGWENDSSSDPQRRKKRYHRHTANQIQRLEALFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKHIGRPISQLPPIQPSHFSSLELSMGGSFASQEMGCPSLDLDLLPASSPSSVPSLPYHHPIHFSNVDRTLMTEVATNAMGQLLRLSQTNEPFWMKSSTDGRDVLDLETYEQAFPRPNTPLKNFHFRTEASRDSGVVIMDSASLIDMFVDSNKWAELFPTIVSIARTIEVISSGMLGSHNGSLQLMYLELQQLSPLVPTRHFYVLRYCQQIEHGIWAIVDVSYNIPRENQIVLHSQCHCFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMNTGSSSQDPGGVIPSPEGKRSMMKLAQRMVSNFCASISASHGHRWTTLSGTNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQFNASSVGRSLGWQSGSRGCTYNKWIASRELHIYSQSFQYKSEQHVDSTRELHRLIWVTCCLLPCGSTSHEYCNEWGGPINYSLATFRIHNFTRRPTGPRRGHVEQLRRAQQVGRLTRNSSISDTSKQFAIREAEFGVGDDG 692
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 34486103 34490142 - Sed0013497.2 Sed08g2021 723797
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2021 692 SMART HOX_1 19 82 IPR001356 GO:0003677(InterPro)
Sed08g2021 692 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Sed08g2021 692 SMART START_1 220 445 IPR002913 GO:0008289(InterPro)
Sed08g2021 692 FunFam Homeobox-leucine zipper protein HDG1 8 94 - -
Sed08g2021 692 CDD homeodomain 21 79 IPR001356 GO:0003677(InterPro)
Sed08g2021 692 FunFam Homeobox-leucine zipper protein GLABRA 2 220 444 - -
Sed08g2021 692 Gene3D - 219 445 IPR023393 -
Sed08g2021 692 Pfam START domain 221 444 IPR002913 GO:0008289(InterPro)
Sed08g2021 692 Pfam Homeodomain 21 76 IPR001356 GO:0003677(InterPro)
Sed08g2021 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 559 IPR042160 -
Sed08g2021 692 SUPERFAMILY Bet v1-like 466 634 - -
Sed08g2021 692 MobiDBLite consensus disorder prediction 1 27 - -
Sed08g2021 692 CDD START_ArGLABRA2_like 217 444 - -
Sed08g2021 692 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed08g2021 692 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
Sed08g2021 692 ProSiteProfiles START domain profile. 211 448 IPR002913 GO:0008289(InterPro)
Sed08g2021 692 Gene3D - 9 94 - -
Sed08g2021 692 SUPERFAMILY Bet v1-like 214 446 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2021 Sed-Chr8:34486103 Sed09g0079 Sed-Chr9:618782 1.60E-138 dispersed
Sed08g2020 Sed-Chr8:34486103 Sed08g2021 Sed-Chr8:34486103 0.00E+00 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39401 PF01852 START 7.90E-43 CL0209 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2021 K09338 - csv:101215660 1001.5