Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2022 ATGGCTGTTTTTGAAAAAGACGATGTGCCGATGCTATCAAACACTGATCCACCATTGTTAGATGAACAAGTGGGTTCTTATTTTCCTTCATTTGCATCATTGGCCCGGAGTTCATCACTATCAATTCCAAAAACTTCTTCTGGGATGCATGGTAATGAAGCAATTCTTGTCGGTCATACTGGTCCTCTACGAATTGAAAGAAAAAGTTCTTTCATAGTGAGTGGTTCAAAATATACTAGCCGGAAACCGGAAAATCTTTCTCAGTCAAATTCAGGTGTGACTGAAAGTAGAACTTCAGAGCCATTGGCAGACCAATTTTCCTCTTTCAGGATGAGGGATGAGTCAGATTGGTTCAATTATAATTATGCTGGCAGAAACGATCACTTAATAAAGTCTGGCCAGCTGGGAATGTGCAATGATCCTTTCTGTATAACTTGCCCAACATATAATTTCAAGCCATCACAACAGAAAATCTCAAGAACGGCAGGCATATTTGACCCTCTGTTTCATAGCGATCTCTATGGAGAAGGGAAAGGTTGGACAGGGAAGTTTCGGGCCTTCCGGTGCTTCTTGCTTTCATGTATCCCTGGAGTTATGAATCCGCATACAAAAAAAGTTCAGATATGGAATAAGTTTTTTGTCATATCTTGCTTAGGGGCGATCTTTTTGGACCCATTATTTTTCCTCTTGCTTGCTGTTCAAGATAAGAACAAGTGCATATATATTAGTTGGCCATTGACCACGGCATTGGTGGTTTTCCGAAGCGTGACTGATTTTATCTATTTCCTTCACATGCTTCTCCAGTTTAGGTTGGCTTACGTGGCACCAGAAACCACAGTTGTTGGTTCAGGTGAATTAGTTGACCAACCGAAGAAAATTGCTTTGAATTACCTTAAAGGAAATTTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATAATAGTCTTACTAGTCCTGCCAAAGTCTTTGGGGGCATCTGGAGCAAATTATGCAAAAAATCTATTGCGCACTGCAGTTATTCTTCAATACTTTCCCAGATTGTATAGGTTTCTACCTCTTCTTGGTGGCCAATCCCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTCACGTTTATGTTGGCTGGTCATTTTGTTGGGTCTTTCTGGTACCTCTTTGGACTTCAGAGTGTGAACCGATGTTTTCGTGACGCCTGCAATAATACCGGAACTAAGAACTGCTTAGAATTTATTGATTGTGGCCATGGGGATGGAGCTAAGATTCATAATCGGGATCCACTGTGGGTAAACTGGAGCAATAATCCGAATGCTACGGCATGTTTTTCTAAAGAAGGTTTTGATTATGGAATCTACCTTCAGGCTGTAAATCTTACTACAAAAAAGAGTATAATCACCAGATATACTTACTCATTATTTTGGGGATTCCAGCAAATTAGTACTCTGGCAGGGAACCTAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGTTCATTATTGGCCTTGGTCTATTGCTGTTTGCTCTTCTTATTGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTAAGGCGTCGTGATGTTGAGCAGTGGATGCAGCATCGTCGCTTGCCAGAGGATTTAAAGAGGCAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGTGTAGATGAAGAAAGGATTTTTAAAAATTTGCCAGAAGACCTACAAAGAAACATAAGACGACATCTCTTCAAATTTGTCAAAAAGGTTCGAATTTTTGCACTGATGGACTATGAGCCTATTTTAGATGCAATACGTGAGAGACTGCGACAAAAGACATACATAGAAGGAAGTGTAGTTTTTAAAGCTGGAGATATCATTGAAAAGATGGTTTTCATTGTGCGAGGGAAAATGGAGAGCTGTGTAGGAGGGACTGGGATTGTGGCTCCTTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTTGAACATTCCTCCATAAACAGAGATATGAAGCGAAATCAAAATCCAACACAAAAACTGGTCAGCAGTAGGACAGTAAAGTGCTTATCAAATGTTGAAGCATTTTCTCTGCGGGCTTCAGACCTTGAAGAAGTGACTAGCATGTTCTCTAGATTCTTGCGAAATTCACGTGTTCTAGGAGCCATAAGGTACGAATCACCATACTGGAGGAACTCAGCGGCAACGCATATTCAAGTAGCCTGGAGATACAGGAAAAGACGTCTTTCTCGATCTAACACCTGA 2316 40.89 MAVFEKDDVPMLSNTDPPLLDEQVGSYFPSFASLARSSSLSIPKTSSGMHGNEAILVGHTGPLRIERKSSFIVSGSKYTSRKPENLSQSNSGVTESRTSEPLADQFSSFRMRDESDWFNYNYAGRNDHLIKSGQLGMCNDPFCITCPTYNFKPSQQKISRTAGIFDPLFHSDLYGEGKGWTGKFRAFRCFLLSCIPGVMNPHTKKVQIWNKFFVISCLGAIFLDPLFFLLLAVQDKNKCIYISWPLTTALVVFRSVTDFIYFLHMLLQFRLAYVAPETTVVGSGELVDQPKKIALNYLKGNFFVDLLVVLPLPQIIVLLVLPKSLGASGANYAKNLLRTAVILQYFPRLYRFLPLLGGQSPSGFVFETAWANFVINLLTFMLAGHFVGSFWYLFGLQSVNRCFRDACNNTGTKNCLEFIDCGHGDGAKIHNRDPLWVNWSNNPNATACFSKEGFDYGIYLQAVNLTTKKSIITRYTYSLFWGFQQISTLAGNLVPSYYVYEVLFTMFIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMQHRRLPEDLKRQVRQAERYNWASTRGVDEERIFKNLPEDLQRNIRRHLFKFVKKVRIFALMDYEPILDAIRERLRQKTYIEGSVVFKAGDIIEKMVFIVRGKMESCVGGTGIVAPLSEGDVCGEELLTWCLEHSSINRDMKRNQNPTQKLVSSRTVKCLSNVEAFSLRASDLEEVTSMFSRFLRNSRVLGAIRYESPYWRNSAATHIQVAWRYRKRRLSRSNT 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34506742 34520682 - Sed0012321.1 Sed08g2022 723798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2022 771 Gene3D - 189 527 - -
Sed08g2022 771 CDD CAP_ED 605 723 IPR000595 -
Sed08g2022 771 SMART cnmp_10 605 742 IPR000595 -
Sed08g2022 771 ProSiteProfiles cAMP/cGMP binding motif profile. 618 675 IPR000595 -
Sed08g2022 771 SUPERFAMILY cAMP-binding domain-like 533 732 IPR018490 -
Sed08g2022 771 Gene3D Helix hairpin bin 528 597 - -
Sed08g2022 771 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 186 766 - -
Sed08g2022 771 Pfam Ion transport protein 211 531 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2022 771 SUPERFAMILY Voltage-gated potassium channels 201 534 - -
Sed08g2022 771 Gene3D Jelly Rolls 603 729 IPR014710 -
Sed08g2022 771 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2022 Sed-Chr8:34506742 Sed13g2104 Sed-Chr13:25724430 3.30E-103 dispersed
Sed08g2022 Sed-Chr8:34506742 Sed01g3501 Sed-Chr1:64132152 7.80E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2022 K05391 - csv:101215903 1229.93