Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2028 | ATGGCTCAGACCGAAGCTCGATCCAAATTGCGGTGGGGAGAGCTCGACGACGACGACGGCGATCTCGATTTCCTCCTTCCGCCCAAGCAAATCATCGGCCCCGACGAGAACGGCATCAAGAAAACCATTGAATATCAGTTCAACGAAGATGGCAACAAGGTCAAGATCACTACCACCACTCGTACTCGTAAGCTCGCCAATGCTCGTCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGCCCAAGTTCGGCGACGCTGTGCACGAAGACGTTGGCAGCCGCCTCACCATGGTCTCCACTGAGGAGATCCTTCTCGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGCGGTGCTGTTCTTATGGTCTGTCGAACTTGCGGCAAAAAGGGTGACCACTGGACTTCAAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGACTGGATAAGACTGCCGCACCGGAGGCTACGGCTGCTGCTCCTGGTGCAACCAAGGGAACATATGTGTCTCCAGGAATGAGAGCCGGGGCAGACAGGGCTGGAGGAACTGATATGAGACGTAGGAATGACGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACAAGAGAGCCCGACCTGCTTGAGCTCTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAATTGATCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTAAACTTTGTGAACCGCGAGGAAGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGAGCCACTTAA | 870 | 52.53 | MAQTEARSKLRWGELDDDDGDLDFLLPPKQIIGPDENGIKKTIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTAAPEATAAAPGATKGTYVSPGMRAGADRAGGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAT | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34575973 | 34578334 | - | Sed0012978.1 | Sed08g2028 | 723804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2028 | 289 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 31 | 157 | IPR024675 | - | |
Sed08g2028 | 289 | SUPERFAMILY | RNA-binding domain, RBD | 200 | 287 | IPR035979 | GO:0003676(InterPro) | |
Sed08g2028 | 289 | SMART | rrm1_1 | 209 | 282 | IPR000504 | GO:0003723(InterPro) | |
Sed08g2028 | 289 | CDD | eIF3G | 37 | 156 | IPR024675 | - | |
Sed08g2028 | 289 | FunFam | Eukaryotic translation initiation factor 3 subunit G | 172 | 289 | - | - | |
Sed08g2028 | 289 | Pfam | RNA recognition motif | 210 | 276 | IPR000504 | GO:0003723(InterPro) | |
Sed08g2028 | 289 | MobiDBLite | consensus disorder prediction | 168 | 208 | - | - | |
Sed08g2028 | 289 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 9 | 288 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed08g2028 | 289 | Gene3D | - | 166 | 289 | IPR012677 | - | |
Sed08g2028 | 289 | PIRSF | Transl_init_eIF-3_RNA-bind | 1 | 289 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed08g2028 | 289 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 286 | IPR000504 | GO:0003723(InterPro) | |
Sed08g2028 | 289 | CDD | RRM_eIF3G_like | 209 | 284 | IPR034240 | - | |
Sed08g2028 | 289 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 42 | 284 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1404 | Sed-Chr6:38608143 | Sed08g2028 | Sed-Chr8:34575973 | 3.70E-46 | dispersed | |
Sed08g2028 | Sed-Chr8:34575973 | Sed09g1641 | Sed-Chr9:39857922 | 3.00E-09 | dispersed | |
Sed08g2028 | Sed-Chr8:34575973 | Sed05g2673 | Sed-Chr5:38150187 | 8.70E-150 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2028 | K03248 | - | csv:101212619 | 532.332 |