Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2028 ATGGCTCAGACCGAAGCTCGATCCAAATTGCGGTGGGGAGAGCTCGACGACGACGACGGCGATCTCGATTTCCTCCTTCCGCCCAAGCAAATCATCGGCCCCGACGAGAACGGCATCAAGAAAACCATTGAATATCAGTTCAACGAAGATGGCAACAAGGTCAAGATCACTACCACCACTCGTACTCGTAAGCTCGCCAATGCTCGTCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGCCCAAGTTCGGCGACGCTGTGCACGAAGACGTTGGCAGCCGCCTCACCATGGTCTCCACTGAGGAGATCCTTCTCGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGCGGTGCTGTTCTTATGGTCTGTCGAACTTGCGGCAAAAAGGGTGACCACTGGACTTCAAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGACTGGATAAGACTGCCGCACCGGAGGCTACGGCTGCTGCTCCTGGTGCAACCAAGGGAACATATGTGTCTCCAGGAATGAGAGCCGGGGCAGACAGGGCTGGAGGAACTGATATGAGACGTAGGAATGACGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACAAGAGAGCCCGACCTGCTTGAGCTCTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAATTGATCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTAAACTTTGTGAACCGCGAGGAAGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGAGCCACTTAA 870 52.53 MAQTEARSKLRWGELDDDDGDLDFLLPPKQIIGPDENGIKKTIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTAAPEATAAAPGATKGTYVSPGMRAGADRAGGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34575973 34578334 - Sed0012978.1 Sed08g2028 723804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2028 289 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Sed08g2028 289 SUPERFAMILY RNA-binding domain, RBD 200 287 IPR035979 GO:0003676(InterPro)
Sed08g2028 289 SMART rrm1_1 209 282 IPR000504 GO:0003723(InterPro)
Sed08g2028 289 CDD eIF3G 37 156 IPR024675 -
Sed08g2028 289 FunFam Eukaryotic translation initiation factor 3 subunit G 172 289 - -
Sed08g2028 289 Pfam RNA recognition motif 210 276 IPR000504 GO:0003723(InterPro)
Sed08g2028 289 MobiDBLite consensus disorder prediction 168 208 - -
Sed08g2028 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed08g2028 289 Gene3D - 166 289 IPR012677 -
Sed08g2028 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed08g2028 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723(InterPro)
Sed08g2028 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Sed08g2028 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 42 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1404 Sed-Chr6:38608143 Sed08g2028 Sed-Chr8:34575973 3.70E-46 dispersed
Sed08g2028 Sed-Chr8:34575973 Sed09g1641 Sed-Chr9:39857922 3.00E-09 dispersed
Sed08g2028 Sed-Chr8:34575973 Sed05g2673 Sed-Chr5:38150187 8.70E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2028 K03248 - csv:101212619 532.332