Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2037 | ATGGGGAGGAAGTCGAGAGCTGAAGGTGGTGGTGACAGCTCTGAGTATCAGGATGTTGGTGGCCGTGGCTCCCAACGGTCAGGTGAAAGGAGGGACTACCCTCAACAACAACATGGTGGCATTGGCTACCAGGGTGGGGCTAGAGGTTGGGCTTCTCAAGGTGGACGTGGAGGTCAAGGCGGTGGTCGTGGCCGGGGAGCGTCTCAACAGCAGCACTATGGAGGACCTCCTGAATACCAAGGCAGGGGTAGAGGTGGGTCATATCAGCATGGTGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCAATGTGGAAAGACCTCCTTCTGGTGCCCCGTCCAGCCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTTTATCAAGGAGGGGTGACTCCGCCAATCTCATCTGCGGCGAGTTCTTCTTCCTCCCACCCACCTGATGCCTCATCAATGGAGCAACAATTTCAGCAGGTGTCCATTCAGGAATCTGATCAAAGCCAAGCAATTCAACCTGCACCCCCTTCTAGTAAATCTATGAGATTCCCTCTGAGGCCAGGAAAGGGTAGCACCGGCACAAAGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGACAAGGATCTTCATCAGTATGATGTTACTATTACACCAGAAGTCACCTCGCGAGTCTACAATCGAGCTGTTATGGGGCAGCTGGTGAAATTATACAGGGTCTCTCACCTTGGAAATCGGCTGCCTGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTCAGAATCACTCTTTCTGATGAAGATGATGGATCAGGAGGACAAAGACGGGAGAGAGAATTTAAAGTTGTGATCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTCTTTCTGCAGGGCAGACAGGCTGATGCCCCTCAAGAAGCACTTCAAGTTTTGGATATTGTTTTACGTGAATTGCCTACTTCAAGGCCAAGGTATTGCCCCGTGGGTCGATCATTTTACTCTCCAGATCTTGGTAGACGCCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGGTTTTATCAGAGTATCCGACCTACTCAAATGGGACTCTCTCTTAATATTGATATGTCATCCACTGCATTCATTGAGCCGTTGCCTGTTATTGATTTTGTTACTCAGCTTCTCAGCCGTGACGTGTCATCTAGACCATTATCTGATGCTGACCGTGTGAAGATAAAGAAGGCCCTTCGAGGTGTCAAGGTTGAAGTGACGCACCGTGGAAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCCCAAGCAACGCGGGAGCTAACTTTCCCGGTAGATGAAAGAGGTACCATGAAATCAGTGGTGGAGTACTTTTATGAAACATATGGGTTTGCTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAACAGAGGCCTAACTATCTACCGATGGAAGTATGCAAAATTGTTGAAGGTCAGAGGTATTCCAAAAGGCTGAATGAGAGACAGATTACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAAGAAGACATTAAGCAGACGGTACGCCATAATGCATATGCTAATGATCCATATGCAAGGGAATTTGGAATCAGAATTAGTGACAAGCTTGCTTCTGTTGAAGCTCGAATTCTTCCTCCACCTTGGCTAAAATATAATGACACCGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAATGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATCTGCATAAATTTCTCACGCTATGTGCAAGACAGTGTTACTCGCGGGTTTTGCTATGAACTTGCCCAAATGTGTTACATTTCTGGCATGGCTTTCAACCCAGAACCAGTACTTCCACCTATTTTTGCTCGTCCTGATCACGTGGAAAAGGCGCTGAAAACTCAGTATCATGATGCAATGACCATTCTCCGACCCCACGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCTCAGTGCTGTTTAACTAAGCATGTCTTTAAAATGAGTAAACAGTATTTGGCCAATGTAGCCTTGAAAATAAATGTCAAGGTTGGAGGAAGAAATACCGTACTTGTTGATGCATTATCTAGGCGCATACCCCTTGTTAGTGACCAGCCGACCATCATATTTGGTGCTGATGTAACCCATCCACACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCCGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCATAGGCAAGAGCTTATTGAAGATCTTTTCAAGACATGGCAGGATCCTGTAAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATATCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACAGGGATGGTGTTAGCGAAGGTCAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGCAAGGCATGTGCTTCTCTTGAATCAAACTATCAACCGCCAGTGACTTTCATTGTAGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATGCTGATCGTCGTGCCGTTGACAAGAGTGGAAACATATTGCCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTCTACCTTTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCGGCTCATTACCATGTTCTATGGGATGAGAACGAGTTCTCAGCTGATGGATTGCAGACTCTAACCAATAACCTTTGTTACACGTATGCAAGGTGTACTCGTTCTGTTTCTATCGTGCCCCCAGCGTACTATGCTCATCTTGCTGCCTTCCGAGCTCGCTTTTATATGGAACCTGAAACCTCTGATAGTGGATCGATAACCAGTGATGCTGCTGCTGGACGCGTTGGAGTTGCTGGTGCTCGCAGTACACGTGCTCCCAGTTTGAATGCTGCTGTGCGGCCTTTGCCAGCTCTCAAAGAAAATGTTAAGAGGGTTATGTTCTATTGTTGA | 3171 | 46.67 | MGRKSRAEGGGDSSEYQDVGGRGSQRSGERRDYPQQQHGGIGYQGGARGWASQGGRGGQGGGRGRGASQQQHYGGPPEYQGRGRGGSYQHGGRSNYGGGNRGGNVERPPSGAPSSPPVPELHQATPVYQGGVTPPISSAASSSSSHPPDASSMEQQFQQVSIQESDQSQAIQPAPPSSKSMRFPLRPGKGSTGTKCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMGQLVKLYRVSHLGNRLPAYDGRKSLYTAGPLPFISNEFRITLSDEDDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRPRYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLSRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFAIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIKQTVRHNAYANDPYAREFGIRISDKLASVEARILPPPWLKYNDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWICINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTQYHDAMTILRPHGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDQPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLESNYQPPVTFIVVQKRHHTRLFANNHADRRAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENEFSADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSITSDAAAGRVGVAGARSTRAPSLNAAVRPLPALKENVKRVMFYC | 1056 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34619182 | 34626054 | - | Sed0023158.1 | Sed08g2037 | 723813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2037 | 1056 | FunFam | Protein argonaute-2 | 386 | 512 | - | - | |
Sed08g2037 | 1056 | Pfam | Glycine-rich region of argonaut | 74 | 176 | IPR024357 | - | |
Sed08g2037 | 1056 | Pfam | Argonaute linker 1 domain | 341 | 391 | IPR014811 | - | |
Sed08g2037 | 1056 | Pfam | Argonaute linker 2 domain | 533 | 579 | IPR032472 | - | |
Sed08g2037 | 1056 | FunFam | Argonaute 10 | 571 | 746 | - | - | |
Sed08g2037 | 1056 | CDD | PAZ_argonaute_like | 392 | 506 | - | - | |
Sed08g2037 | 1056 | FunFam | protein argonaute 10-like | 752 | 1056 | - | - | |
Sed08g2037 | 1056 | CDD | Piwi_ago-like | 551 | 1003 | IPR045246 | - | |
Sed08g2037 | 1056 | SMART | Piwi_a_2 | 683 | 1004 | IPR003165 | GO:0003676(InterPro) | |
Sed08g2037 | 1056 | Coils | Coil | 861 | 881 | - | - | |
Sed08g2037 | 1056 | ProSiteProfiles | Piwi domain profile. | 683 | 1004 | IPR003165 | GO:0003676(InterPro) | |
Sed08g2037 | 1056 | Gene3D | paz domain | 386 | 511 | - | - | |
Sed08g2037 | 1056 | SUPERFAMILY | Ribonuclease H-like | 678 | 1004 | IPR012337 | - | |
Sed08g2037 | 1056 | Pfam | Piwi domain | 684 | 1003 | IPR003165 | GO:0003676(InterPro) | |
Sed08g2037 | 1056 | MobiDBLite | consensus disorder prediction | 1 | 188 | - | - | |
Sed08g2037 | 1056 | Pfam | PAZ domain | 397 | 523 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g2037 | 1056 | SMART | DUF1785_2 | 340 | 392 | IPR014811 | - | |
Sed08g2037 | 1056 | SUPERFAMILY | PAZ domain | 197 | 544 | IPR036085 | GO:0005515(InterPro) | |
Sed08g2037 | 1056 | Gene3D | - | 571 | 746 | - | - | |
Sed08g2037 | 1056 | ProSiteProfiles | PAZ domain profile. | 394 | 507 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g2037 | 1056 | SMART | PAZ_2_a_3 | 397 | 529 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g2037 | 1056 | Gene3D | - | 752 | 1056 | IPR036397 | GO:0003676(InterPro) | |
Sed08g2037 | 1056 | Pfam | Mid domain of argonaute | 590 | 665 | IPR032473 | - | |
Sed08g2037 | 1056 | MobiDBLite | consensus disorder prediction | 130 | 176 | - | - | |
Sed08g2037 | 1056 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 184 | 1010 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Sed08g2037 | 1056 | Pfam | N-terminal domain of argonaute | 195 | 329 | IPR032474 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1864 | Sed-Chr3:12502384 | Sed08g2037 | Sed-Chr8:34619182 | 1.80E-300 | dispersed | |
Sed03g1865 | Sed-Chr3:12502384 | Sed08g2037 | Sed-Chr8:34619182 | 1.80E-300 | dispersed | |
Sed07g1960 | Sed-Chr7:34223725 | Sed08g2037 | Sed-Chr8:34619182 | 1.80E-173 | dispersed | |
Sed08g2037 | Sed-Chr8:34619182 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2037 | K11593 | - | csv:101212130 | 1862.81 |