Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2037 ATGGGGAGGAAGTCGAGAGCTGAAGGTGGTGGTGACAGCTCTGAGTATCAGGATGTTGGTGGCCGTGGCTCCCAACGGTCAGGTGAAAGGAGGGACTACCCTCAACAACAACATGGTGGCATTGGCTACCAGGGTGGGGCTAGAGGTTGGGCTTCTCAAGGTGGACGTGGAGGTCAAGGCGGTGGTCGTGGCCGGGGAGCGTCTCAACAGCAGCACTATGGAGGACCTCCTGAATACCAAGGCAGGGGTAGAGGTGGGTCATATCAGCATGGTGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCAATGTGGAAAGACCTCCTTCTGGTGCCCCGTCCAGCCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTTTATCAAGGAGGGGTGACTCCGCCAATCTCATCTGCGGCGAGTTCTTCTTCCTCCCACCCACCTGATGCCTCATCAATGGAGCAACAATTTCAGCAGGTGTCCATTCAGGAATCTGATCAAAGCCAAGCAATTCAACCTGCACCCCCTTCTAGTAAATCTATGAGATTCCCTCTGAGGCCAGGAAAGGGTAGCACCGGCACAAAGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGACAAGGATCTTCATCAGTATGATGTTACTATTACACCAGAAGTCACCTCGCGAGTCTACAATCGAGCTGTTATGGGGCAGCTGGTGAAATTATACAGGGTCTCTCACCTTGGAAATCGGCTGCCTGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTCAGAATCACTCTTTCTGATGAAGATGATGGATCAGGAGGACAAAGACGGGAGAGAGAATTTAAAGTTGTGATCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTCTTTCTGCAGGGCAGACAGGCTGATGCCCCTCAAGAAGCACTTCAAGTTTTGGATATTGTTTTACGTGAATTGCCTACTTCAAGGCCAAGGTATTGCCCCGTGGGTCGATCATTTTACTCTCCAGATCTTGGTAGACGCCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGGTTTTATCAGAGTATCCGACCTACTCAAATGGGACTCTCTCTTAATATTGATATGTCATCCACTGCATTCATTGAGCCGTTGCCTGTTATTGATTTTGTTACTCAGCTTCTCAGCCGTGACGTGTCATCTAGACCATTATCTGATGCTGACCGTGTGAAGATAAAGAAGGCCCTTCGAGGTGTCAAGGTTGAAGTGACGCACCGTGGAAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCCCAAGCAACGCGGGAGCTAACTTTCCCGGTAGATGAAAGAGGTACCATGAAATCAGTGGTGGAGTACTTTTATGAAACATATGGGTTTGCTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAACAGAGGCCTAACTATCTACCGATGGAAGTATGCAAAATTGTTGAAGGTCAGAGGTATTCCAAAAGGCTGAATGAGAGACAGATTACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAAGAAGACATTAAGCAGACGGTACGCCATAATGCATATGCTAATGATCCATATGCAAGGGAATTTGGAATCAGAATTAGTGACAAGCTTGCTTCTGTTGAAGCTCGAATTCTTCCTCCACCTTGGCTAAAATATAATGACACCGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAATGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATCTGCATAAATTTCTCACGCTATGTGCAAGACAGTGTTACTCGCGGGTTTTGCTATGAACTTGCCCAAATGTGTTACATTTCTGGCATGGCTTTCAACCCAGAACCAGTACTTCCACCTATTTTTGCTCGTCCTGATCACGTGGAAAAGGCGCTGAAAACTCAGTATCATGATGCAATGACCATTCTCCGACCCCACGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCTCAGTGCTGTTTAACTAAGCATGTCTTTAAAATGAGTAAACAGTATTTGGCCAATGTAGCCTTGAAAATAAATGTCAAGGTTGGAGGAAGAAATACCGTACTTGTTGATGCATTATCTAGGCGCATACCCCTTGTTAGTGACCAGCCGACCATCATATTTGGTGCTGATGTAACCCATCCACACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCCGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCATAGGCAAGAGCTTATTGAAGATCTTTTCAAGACATGGCAGGATCCTGTAAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATATCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACAGGGATGGTGTTAGCGAAGGTCAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGCAAGGCATGTGCTTCTCTTGAATCAAACTATCAACCGCCAGTGACTTTCATTGTAGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATGCTGATCGTCGTGCCGTTGACAAGAGTGGAAACATATTGCCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTCTACCTTTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCGGCTCATTACCATGTTCTATGGGATGAGAACGAGTTCTCAGCTGATGGATTGCAGACTCTAACCAATAACCTTTGTTACACGTATGCAAGGTGTACTCGTTCTGTTTCTATCGTGCCCCCAGCGTACTATGCTCATCTTGCTGCCTTCCGAGCTCGCTTTTATATGGAACCTGAAACCTCTGATAGTGGATCGATAACCAGTGATGCTGCTGCTGGACGCGTTGGAGTTGCTGGTGCTCGCAGTACACGTGCTCCCAGTTTGAATGCTGCTGTGCGGCCTTTGCCAGCTCTCAAAGAAAATGTTAAGAGGGTTATGTTCTATTGTTGA 3171 46.67 MGRKSRAEGGGDSSEYQDVGGRGSQRSGERRDYPQQQHGGIGYQGGARGWASQGGRGGQGGGRGRGASQQQHYGGPPEYQGRGRGGSYQHGGRSNYGGGNRGGNVERPPSGAPSSPPVPELHQATPVYQGGVTPPISSAASSSSSHPPDASSMEQQFQQVSIQESDQSQAIQPAPPSSKSMRFPLRPGKGSTGTKCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMGQLVKLYRVSHLGNRLPAYDGRKSLYTAGPLPFISNEFRITLSDEDDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRPRYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLSRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFAIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIKQTVRHNAYANDPYAREFGIRISDKLASVEARILPPPWLKYNDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWICINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTQYHDAMTILRPHGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDQPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLESNYQPPVTFIVVQKRHHTRLFANNHADRRAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENEFSADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSITSDAAAGRVGVAGARSTRAPSLNAAVRPLPALKENVKRVMFYC 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34619182 34626054 - Sed0023158.1 Sed08g2037 723813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2037 1056 FunFam Protein argonaute-2 386 512 - -
Sed08g2037 1056 Pfam Glycine-rich region of argonaut 74 176 IPR024357 -
Sed08g2037 1056 Pfam Argonaute linker 1 domain 341 391 IPR014811 -
Sed08g2037 1056 Pfam Argonaute linker 2 domain 533 579 IPR032472 -
Sed08g2037 1056 FunFam Argonaute 10 571 746 - -
Sed08g2037 1056 CDD PAZ_argonaute_like 392 506 - -
Sed08g2037 1056 FunFam protein argonaute 10-like 752 1056 - -
Sed08g2037 1056 CDD Piwi_ago-like 551 1003 IPR045246 -
Sed08g2037 1056 SMART Piwi_a_2 683 1004 IPR003165 GO:0003676(InterPro)
Sed08g2037 1056 Coils Coil 861 881 - -
Sed08g2037 1056 ProSiteProfiles Piwi domain profile. 683 1004 IPR003165 GO:0003676(InterPro)
Sed08g2037 1056 Gene3D paz domain 386 511 - -
Sed08g2037 1056 SUPERFAMILY Ribonuclease H-like 678 1004 IPR012337 -
Sed08g2037 1056 Pfam Piwi domain 684 1003 IPR003165 GO:0003676(InterPro)
Sed08g2037 1056 MobiDBLite consensus disorder prediction 1 188 - -
Sed08g2037 1056 Pfam PAZ domain 397 523 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g2037 1056 SMART DUF1785_2 340 392 IPR014811 -
Sed08g2037 1056 SUPERFAMILY PAZ domain 197 544 IPR036085 GO:0005515(InterPro)
Sed08g2037 1056 Gene3D - 571 746 - -
Sed08g2037 1056 ProSiteProfiles PAZ domain profile. 394 507 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g2037 1056 SMART PAZ_2_a_3 397 529 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g2037 1056 Gene3D - 752 1056 IPR036397 GO:0003676(InterPro)
Sed08g2037 1056 Pfam Mid domain of argonaute 590 665 IPR032473 -
Sed08g2037 1056 MobiDBLite consensus disorder prediction 130 176 - -
Sed08g2037 1056 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 184 1010 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed08g2037 1056 Pfam N-terminal domain of argonaute 195 329 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1864 Sed-Chr3:12502384 Sed08g2037 Sed-Chr8:34619182 1.80E-300 dispersed
Sed03g1865 Sed-Chr3:12502384 Sed08g2037 Sed-Chr8:34619182 1.80E-300 dispersed
Sed07g1960 Sed-Chr7:34223725 Sed08g2037 Sed-Chr8:34619182 1.80E-173 dispersed
Sed08g2037 Sed-Chr8:34619182 Sed12g0978 Sed-Chr12:6126796 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2037 K11593 - csv:101212130 1862.81