Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2039 ATGGCCGCCCAAATCTTTGCCCTGATTTTCCTCACGCTCCTCTCCGCCGCCGCCGCCGTGAACATAAACGCCATCGACCGGTGCTGGCGATCCAACCCCTACTGGAGAAGAAACCGCCAACAACTCGCCGCCTGCTCCGTCGGATTCGCCGGAAAAATGAGGAACAACATCGGAAGAAACCTCGTCCGCTACCAGGTAACCGACCCGAGCGACGACCCGATCAACCCCCGACCCGGAACCCTCCGGTTCGGCGCCACAATGATCAAATCCAAAGTCTGGATCACATTCCAACGCGACATGCAAATCAGGCTGAAGCAGCCGCTGCTGATCAGCAGCTACACCGCCGTGGACGGCCGCGGCGCCGCCGTGCACATCGCGGGGAACGCCTGTCTGATGGTGCTCAAAGCCACGAACGTGATAATCCATGGGCTTTTTATCCACCACTGCAGGGCCCAGTTGGCGGCCCGGGTGATGGGCCCGGGTTCGAAGGTTGTTACGCTGGGACACGTGGACGGCGATGCCATTCGCTTGGTGTCCGCCTCTAAGGTCTGGATTGACCACAACACGCTTTACCGGTGCGAGGATGGGCTGGTCGACGTCACCAGAGGGTCCACTGACGTCACGGTTTCTAACAATTGGTTCAGAGATCAGGATAAGGTTATGCTTCTGGGTCATGAGGACGGTTATTTTCGTGACAGGAATATGAGAGTCACTGTTTTGTATAACCATTTTGGACCCAATTGCAACCAAAGGATGCCTAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTATACCAAGGTTGGACACAATACGCAATTGGAGGCAGCATGAACCCTAGTGTCAACAGTGAGGCCAACCTTTTCATCGCATCAAAATCAAAGCAGATAATATGGAGCACGGGAAAAGTAGAGCAGAATAAGTGGAATTTCCATTCAGTGAGAGACGTTTTCGAAAATGGAGCTTCATTTGCGCAAATTGGCGTGGGCCGAGGCCTTGTAAAGCCCAATTACTCGGCCCAACAGCGTTTTAGAGTTGGAGATGCCAAATGGCTGAGATCGTTGACAAGTTCTTCCGGAGCTTTGCGGTGCTCACGAAACTCAAGATGTTGA 1116 53.67 MAAQIFALIFLTLLSAAAAVNINAIDRCWRSNPYWRRNRQQLAACSVGFAGKMRNNIGRNLVRYQVTDPSDDPINPRPGTLRFGATMIKSKVWITFQRDMQIRLKQPLLISSYTAVDGRGAAVHIAGNACLMVLKATNVIIHGLFIHHCRAQLAARVMGPGSKVVTLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLVDVTRGSTDVTVSNNWFRDQDKVMLLGHEDGYFRDRNMRVTVLYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVNSEANLFIASKSKQIIWSTGKVEQNKWNFHSVRDVFENGASFAQIGVGRGLVKPNYSAQQRFRVGDAKWLRSLTSSSGALRCSRNSRC 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34637426 34639537 + Sed0015814.1 Sed08g2039 723815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 342 365 IPR018082 -
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Sed08g2039 371 PRINTS Pollen allergen Amb family signature 45 62 IPR018082 -
Sed08g2039 371 Pfam Pectate lyase 108 290 IPR002022 -
Sed08g2039 371 SUPERFAMILY Pectin lyase-like 23 362 IPR011050 -
Sed08g2039 371 Gene3D - 22 364 IPR012334 -
Sed08g2039 371 PANTHER PECTATE LYASE 18-RELATED 20 367 IPR045032 GO:0030570(InterPro)
Sed08g2039 371 SMART amb_all 99 296 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2039 Sed-Chr8:34637426 Sed11g1880 Sed-Chr11:33382568 1.50E-82 dispersed
Sed03g2975 Sed-Chr3:46625827 Sed08g2039 Sed-Chr8:34637426 2.00E-30 transposed
Sed06g1558 Sed-Chr6:40394637 Sed08g2039 Sed-Chr8:34637426 3.70E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2039 K01728 - csv:101217103 633.639