Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2057 | ATGGAACCAAATGATCACCAACTTCACTATCACCATGACCATCATGACCATCACTCTGCTTCTACTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATTCTCAACCTCTTGTTGAGACCTCGAAGAAGCCCTCGCCCAAGCGCACTCCTACCAAGGACCGCCACACGAAAGTCGATGGACGCGGTCGCCGCACCCGAATGCCTGCCCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCCGACGGTGAAACCATTGAGTGGCTTCTTCAACAGGCTGAGCCTGCCGTCATCGCTGCCACCGGTACCGGCACGATTCCTGCAAACTTCAACTCTCTCAATACGTCGTTGAGGCGATCGTCTGCGAGTATTTCTTTACCGTCCCAACTTAGATCCTCGTCCTATTATCATCCAGGAGTGATGGCGTTCAACTCTCAGCCAATAAATATGGGAACAATGACGCAAGCAAAAGAAGATCCATTGCCTGATCCTCAGCGTCCAATGGGGAGTTATCTCCTACAGCCAAGCACAGGGCCAATCCCTGGGAACATCCCGGCCAACTTTTGGATGCTTTCCGACGGCACTCTCGGCGGCGTCGGCGGCGGAGGCGACCCCTTATGGCGGTTCCCGTCGGCCAACCACGACAGCGCTTTATACAGATCAGGACAAACCTCCAGCGCCGGTGGTTTGCGTCTATCCAATCTCGGCGCTCCGTTGGCGCTCCTCCCAGGGAAGCCGATGGGGCTCACTAACGGCGGTGGTGGCGGCGGTGGTGGAAACATGAACGATGGGCAGTTGAATATCTACGGCGGCCAAAATCCGCCGCCGTCGGATACCGGCGGGTAG | 864 | 55.21 | MEPNDHQLHYHHDHHDHHSASTFPLQLLEKKEYDSQPLVETSKKPSPKRTPTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSSASISLPSQLRSSSYYHPGVMAFNSQPINMGTMTQAKEDPLPDPQRPMGSYLLQPSTGPIPGNIPANFWMLSDGTLGGVGGGGDPLWRFPSANHDSALYRSGQTSSAGGLRLSNLGAPLALLPGKPMGLTNGGGGGGGGNMNDGQLNIYGGQNPPPSDTGG | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34836573 | 34838642 | - | Sed0002592.1 | Sed08g2057 | 723833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed08g2057 | 287 | Pfam | TCP family transcription factor | 51 | 139 | IPR017887 | - | |
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 33 | 65 | - | - | |
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 256 | 287 | - | - | |
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed08g2057 | 287 | ProSiteProfiles | TCP domain profile. | 52 | 106 | IPR017887 | - | |
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 271 | 287 | - | - | |
Sed08g2057 | 287 | MobiDBLite | consensus disorder prediction | 46 | 65 | - | - | |
Sed08g2057 | 287 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 40 | 162 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2057 | Sed-Chr8:34836573 | Sed09g0095 | Sed-Chr9:716465 | 1.10E-27 | dispersed | |
Sed12g1943 | Sed-Chr12:30515749 | Sed08g2057 | Sed-Chr8:34836573 | 3.20E-55 | wgd | |
Sed06g1538 | Sed-Chr6:40133483 | Sed08g2057 | Sed-Chr8:34836573 | 5.40E-46 | wgd | |
Sed08g0209 | Sed-Chr8:1194138 | Sed08g2057 | Sed-Chr8:34836573 | 2.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39406 | PF03634 | TCP | 3.20E-35 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2057 | - | - | - | 0.0 |