Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2057 ATGGAACCAAATGATCACCAACTTCACTATCACCATGACCATCATGACCATCACTCTGCTTCTACTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATTCTCAACCTCTTGTTGAGACCTCGAAGAAGCCCTCGCCCAAGCGCACTCCTACCAAGGACCGCCACACGAAAGTCGATGGACGCGGTCGCCGCACCCGAATGCCTGCCCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCCGACGGTGAAACCATTGAGTGGCTTCTTCAACAGGCTGAGCCTGCCGTCATCGCTGCCACCGGTACCGGCACGATTCCTGCAAACTTCAACTCTCTCAATACGTCGTTGAGGCGATCGTCTGCGAGTATTTCTTTACCGTCCCAACTTAGATCCTCGTCCTATTATCATCCAGGAGTGATGGCGTTCAACTCTCAGCCAATAAATATGGGAACAATGACGCAAGCAAAAGAAGATCCATTGCCTGATCCTCAGCGTCCAATGGGGAGTTATCTCCTACAGCCAAGCACAGGGCCAATCCCTGGGAACATCCCGGCCAACTTTTGGATGCTTTCCGACGGCACTCTCGGCGGCGTCGGCGGCGGAGGCGACCCCTTATGGCGGTTCCCGTCGGCCAACCACGACAGCGCTTTATACAGATCAGGACAAACCTCCAGCGCCGGTGGTTTGCGTCTATCCAATCTCGGCGCTCCGTTGGCGCTCCTCCCAGGGAAGCCGATGGGGCTCACTAACGGCGGTGGTGGCGGCGGTGGTGGAAACATGAACGATGGGCAGTTGAATATCTACGGCGGCCAAAATCCGCCGCCGTCGGATACCGGCGGGTAG 864 55.21 MEPNDHQLHYHHDHHDHHSASTFPLQLLEKKEYDSQPLVETSKKPSPKRTPTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSSASISLPSQLRSSSYYHPGVMAFNSQPINMGTMTQAKEDPLPDPQRPMGSYLLQPSTGPIPGNIPANFWMLSDGTLGGVGGGGDPLWRFPSANHDSALYRSGQTSSAGGLRLSNLGAPLALLPGKPMGLTNGGGGGGGGNMNDGQLNIYGGQNPPPSDTGG 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34836573 34838642 - Sed0002592.1 Sed08g2057 723833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2057 287 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2057 287 Pfam TCP family transcription factor 51 139 IPR017887 -
Sed08g2057 287 MobiDBLite consensus disorder prediction 33 65 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 256 287 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 1 20 - -
Sed08g2057 287 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Sed08g2057 287 MobiDBLite consensus disorder prediction 271 287 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 46 65 - -
Sed08g2057 287 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 162 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2057 Sed-Chr8:34836573 Sed09g0095 Sed-Chr9:716465 1.10E-27 dispersed
Sed12g1943 Sed-Chr12:30515749 Sed08g2057 Sed-Chr8:34836573 3.20E-55 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g2057 Sed-Chr8:34836573 5.40E-46 wgd
Sed08g0209 Sed-Chr8:1194138 Sed08g2057 Sed-Chr8:34836573 2.50E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39406 PF03634 TCP 3.20E-35 No_clan Sed TF