Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2057 ATGGAACCAAATGATCACCAACTTCACTATCACCATGACCATCATGACCATCACTCTGCTTCTACTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATTCTCAACCTCTTGTTGAGACCTCGAAGAAGCCCTCGCCCAAGCGCACTCCTACCAAGGACCGCCACACGAAAGTCGATGGACGCGGTCGCCGCACCCGAATGCCTGCCCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCCGACGGTGAAACCATTGAGTGGCTTCTTCAACAGGCTGAGCCTGCCGTCATCGCTGCCACCGGTACCGGCACGATTCCTGCAAACTTCAACTCTCTCAATACGTCGTTGAGGCGATCGTCTGCGAGTATTTCTTTACCGTCCCAACTTAGATCCTCGTCCTATTATCATCCAGGAGTGATGGCGTTCAACTCTCAGCCAATAAATATGGGAACAATGACGCAAGCAAAAGAAGATCCATTGCCTGATCCTCAGCGTCCAATGGGGAGTTATCTCCTACAGCCAAGCACAGGGCCAATCCCTGGGAACATCCCGGCCAACTTTTGGATGCTTTCCGACGGCACTCTCGGCGGCGTCGGCGGCGGAGGCGACCCCTTATGGCGGTTCCCGTCGGCCAACCACGACAGCGCTTTATACAGATCAGGACAAACCTCCAGCGCCGGTGGTTTGCGTCTATCCAATCTCGGCGCTCCGTTGGCGCTCCTCCCAGGGAAGCCGATGGGGCTCACTAACGGCGGTGGTGGCGGCGGTGGTGGAAACATGAACGATGGGCAGTTGAATATCTACGGCGGCCAAAATCCGCCGCCGTCGGATACCGGCGGGTAG 864 55.21 MEPNDHQLHYHHDHHDHHSASTFPLQLLEKKEYDSQPLVETSKKPSPKRTPTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSSASISLPSQLRSSSYYHPGVMAFNSQPINMGTMTQAKEDPLPDPQRPMGSYLLQPSTGPIPGNIPANFWMLSDGTLGGVGGGGDPLWRFPSANHDSALYRSGQTSSAGGLRLSNLGAPLALLPGKPMGLTNGGGGGGGGNMNDGQLNIYGGQNPPPSDTGG 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34836573 34838642 - Sed0002592.1 Sed08g2057 723833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2057 287 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2057 287 Pfam TCP family transcription factor 51 139 IPR017887 -
Sed08g2057 287 MobiDBLite consensus disorder prediction 33 65 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 256 287 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 1 20 - -
Sed08g2057 287 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Sed08g2057 287 MobiDBLite consensus disorder prediction 271 287 - -
Sed08g2057 287 MobiDBLite consensus disorder prediction 46 65 - -
Sed08g2057 287 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 162 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2057 Sed-Chr8:34836573 Sed09g0095 Sed-Chr9:716465 1.10E-27 dispersed
Sed12g1943 Sed-Chr12:30515749 Sed08g2057 Sed-Chr8:34836573 3.20E-55 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g2057 Sed-Chr8:34836573 5.40E-46 wgd
Sed08g0209 Sed-Chr8:1194138 Sed08g2057 Sed-Chr8:34836573 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39406 PF03634 TCP 3.20E-35 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2057 - - - 0.0