Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2065 ATGGCAGAGGAAAACAGAGTGGTGCTTTATGGGATGTGGTATAGCCCTTATGTGAAGAGGATCGAACTTGCCCTTAAAATTAAGGGCATCCCTTTTGAATACGTGGAAGAAGATCTCAAGAACAAAAGCCCAGATCTCATCAAATTCAATCCTGTCCACAAGAAAGTTCCTGTACTGGTTCATAATGGAAAACCCATCTGTGAATCCTCTGTAATTTTGGAATATATTGATGAGGTTTGGAGCAACACTGGTCCTGCCCTTTTGCCTCAGGGTCCCTACAAACGAGCCCAGGTTCGGTTCTGGGCTGATTTCATCCAGAAGCAGTTGTTTGGTGCGTTTCTGAGTGCGTTCACGACGAGCGGAGAAGTGCAGGAACGGGCGGTTGAGGAAGGGTTGAAGGGGCTGATTTCAGAGGCGGAAGGGCCGTTTGTGAACGGACAACAAATGGGGGTTTTGGACATTGTGATGTGTTGTTCGTTTTTGGGGGCGTATAAGCTGCAACAGCAAGTGCTCGGAATTGTGCTGATCCCGTCGGAGAAGTTTCCGGTGATGGTGCGGTGGTTGAGTGCAATGGCTGAGCATCCGGTTGTGAAGGAGAAGATTTTGGGTTTGCTTCGGTTTTTCCGCCACAATGCTCTGCAGTCGCCTCCCGCTTGA 657 49.01 MAEENRVVLYGMWYSPYVKRIELALKIKGIPFEYVEEDLKNKSPDLIKFNPVHKKVPVLVHNGKPICESSVILEYIDEVWSNTGPALLPQGPYKRAQVRFWADFIQKQLFGAFLSAFTTSGEVQERAVEEGLKGLISEAEGPFVNGQQMGVLDIVMCCSFLGAYKLQQQVLGIVLIPSEKFPVMVRWLSAMAEHPVVKEKILGLLRFFRHNALQSPPA 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34873610 34878571 + Sed0000403.1 Sed08g2065 723841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2065 218 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Sed08g2065 218 Gene3D Glutaredoxin 1 87 - -
Sed08g2065 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Sed08g2065 218 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Sed08g2065 218 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Sed08g2065 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 218 IPR010987 -
Sed08g2065 218 CDD GST_N_Tau 7 80 - -
Sed08g2065 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 201 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed08g2065 218 SFLD Main.3: Omega- and Tau-like 4 201 IPR045073 -
Sed08g2065 218 SFLD Glutathione Transferase (cytosolic) 4 201 IPR040079 -
Sed08g2065 218 CDD GST_C_Tau 92 208 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed08g2065 218 FunFam Glutathione S-transferase U10 1 86 - -
Sed08g2065 218 Gene3D - 88 213 - -
Sed08g2065 218 SUPERFAMILY GST C-terminal domain-like 78 200 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2065 K00799 - - csv:101217019 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2063 Sed-Chr8:34866010 Sed08g2065 Sed-Chr8:34873610 3.90E-63 dispersed
Sed08g2065 Sed-Chr8:34873610 Sed12g0281 Sed-Chr12:1606834 2.50E-40 dispersed
Sed08g2064 Sed-Chr8:34870197 Sed08g2065 Sed-Chr8:34873610 1.80E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75