Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2078 ATGGCCACTGTCATGACCCAGGCTTCTGCCGCTGTCTTCCGGCCGTGCGCGTCGAGATCCAGGTTTCTTTCTGGGTCGTCGGGAAAGTTTAACCGAGCTTTGTACGTTAAGCCAGCAACTTCTTCGGTTCCTTGTGCTTTCAAAGTAGAGGCCAAGAAAGGAGAGTGGTTACCAGGTTTGCCATCACCAGCTTACCTTGATGGCAGTCTAGCAGGTGACAATGGATTTGACCCCTTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTCGTGAACGGCCGATGGGCGATGCTCGGAGTTGCGGGAATGCTATTACCTGAAGTCCTCACAAGTTTCGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAGTATTTCGCATCGTCGTCGACTCTGTTTGTGATCGAGTTCATTCTGTTCCACTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTCAACCAACTCTTGAAGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATTATTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTTTTGCAGCACATTTCAGATCCATGGCACAACACTATTGTTCAGACACTAAGTGGATAA 756 47.09 MATVMTQASAAVFRPCASRSRFLSGSSGKFNRALYVKPATSSVPCAFKVEAKKGEWLPGLPSPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVLTSFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFQPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDPWHNTIVQTLSG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34963279 34964755 - Sed0020579.1 Sed08g2078 723854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2078 251 SUPERFAMILY Chlorophyll a-b binding protein 52 249 - -
Sed08g2078 251 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 14 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed08g2078 251 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Sed08g2078 251 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Sed08g2078 251 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2078 Sed-Chr8:34963279 Sed12g1695 Sed-Chr12:28189246 2.70E-54 dispersed
Sed11g0951 Sed-Chr11:23937939 Sed08g2078 Sed-Chr8:34963279 1.10E-53 transposed
Sed01g2387 Sed-Chr1:17929741 Sed08g2078 Sed-Chr8:34963279 3.20E-31 wgd
Sed12g1956 Sed-Chr12:30606377 Sed08g2078 Sed-Chr8:34963279 2.20E-125 wgd
Sed08g0226 Sed-Chr8:1288558 Sed08g2078 Sed-Chr8:34963279 3.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2078 K08910 - csv:101218675 489.96