Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2079 ATGACAGGTGTTTATTGTTTCGAGTTTTTGTTGTTTGGTATTTTTTGTTTAAGCTCCATTGCTAATGGATATGGTGCTGGAAACTGGATCAATGGCGCTCATGCTACTTTCTATGGAGGCCCCGATGCCTCTGGTACATTAGGTGGGGCTTGTGGATATGGAAATGTATACAGCGAAAACTATGGGACCAAAACGACGGCGTTGAGTACAGCATTGTTCGAGAATGGACTAAGTTGTGGGGCTTGTTTTGAGGTCAAATGTGTGAATGACCAACAATGGTGTCTCTCCGGCTCCGTCGTCGTAACCACCACCAACTTCTGCCCCCCGGGCGGTTGGTGCGACCCTTCCCTACGCCATTTCGATCTCTCCCAACCTGCTTTTGAGACCATTGCTCAAACGATCGCCGGGGTTGTCCCCGTCGCTTATCGAAGGGTCAGATGTGCAAGAAGGGGAGGAATTAAATTCAGAATTGAAGGAAATCCATACTTCAATTTGGTGCTCATAAGCAATGTGGGAGGTGCTGGAGATGTGCATGGTGTTTACATCAAAGGGTCTAGGACTGGTTGGAGGGCAATGTTCAGAAACTGGGGTCAAAATTGGCAGAGCAATGACTACCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTGGTGATGGTCGCTCCCTTGTGTCCTACAATGTTGCCCCTTCTGGCTGGTCCTTTGGACAAGCCTTTTTTGGCAAACAGTTTACTTAG 738 47.56 MTGVYCFEFLLFGIFCLSSIANGYGAGNWINGAHATFYGGPDASGTLGGACGYGNVYSENYGTKTTALSTALFENGLSCGACFEVKCVNDQQWCLSGSVVVTTTNFCPPGGWCDPSLRHFDLSQPAFETIAQTIAGVVPVAYRRVRCARRGGIKFRIEGNPYFNLVLISNVGGAGDVHGVYIKGSRTGWRAMFRNWGQNWQSNDYLVGQSLSFKVITGDGRSLVSYNVAPSGWSFGQAFFGKQFT 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34965760 34968314 - Sed0023931.1 Sed08g2079 723855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2079 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Sed08g2079 245 SUPERFAMILY PHL pollen allergen 149 240 IPR036749 -
Sed08g2079 245 Pfam Lytic transglycolase 65 142 IPR009009 -
Sed08g2079 245 CDD DPBB_EXPA_N 29 147 - -
Sed08g2079 245 Gene3D - 152 244 IPR036749 -
Sed08g2079 245 SMART dpbb_1 65 142 IPR007112 -
Sed08g2079 245 Gene3D - 18 148 IPR036908 -
Sed08g2079 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Sed08g2079 245 PANTHER EXPANSIN-A15 17 244 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 FunFam Expansin 152 244 - -
Sed08g2079 245 SUPERFAMILY Barwin-like endoglucanases 29 170 IPR036908 -
Sed08g2079 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Sed08g2079 245 Pfam Expansin C-terminal domain 153 230 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3141 Sed-Chr5:41476230 Sed08g2079 Sed-Chr8:34965760 1.00E-27 dispersed
Sed08g2079 Sed-Chr8:34965760 Sed11g2112 Sed-Chr11:35050955 4.00E-87 dispersed
Sed11g2008 Sed-Chr11:34240098 Sed08g2079 Sed-Chr8:34965760 4.90E-93 wgd
Sed03g0216 Sed-Chr3:1374385 Sed08g2079 Sed-Chr8:34965760 1.30E-88 wgd
Sed06g1515 Sed-Chr6:39836514 Sed08g2079 Sed-Chr8:34965760 2.90E-93 wgd
Sed08g0227 Sed-Chr8:1292903 Sed08g2079 Sed-Chr8:34965760 2.20E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2079 - - - 0.0