Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2087 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGGGTGTGGTAGCGGGGTTAAGAGTGGGGGAGATGGGTTTATAGACAGGACCAAAGTCAGGATTTTGCTGTGTGATAATGATCCTAAAAGTTCTGAAGAGGTTTTGAAGCTTCTTTTGAAATGTTCATACCAAGTCATTTCTGTGAGTTCAGCTAGACAGGTCATTGATGCGTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTAGACTTGCCATTGGCCAAAGGTATGAAAATGTTGAAGTATATAACCCGAGATGAAGAGCTGCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAAGTTCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACACACATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATCTTGAATTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACGTTGTTCTCGGATGACACTGATGACAAGTCACATAGGAGCACAAATCCAGAGATGGGAGTTGCAACACATCAAGAAGATGAGTCTGGAATTGCTTCTGCACCGGTAGAGCCTCCTGCTGTTCATCCAGTGGAACATCAGCCAGATGTACCTGGAATTAGTGAGCGTCGAACAGGGCAACTTTCATCATCATGCCCGAGAAAGAGTGAACTAAAGATTGGAGAATCATCCGCATTCTTTACCTACGTCAAATCGAGAACTGGGAAGAATAAGGCAGTAGATGTTGAAGACAAGGCCAAGCGACTTTTGCTCGATGAAAACCATCAAGAAACTGGTCAGCATGCAGTTCGTCTTCCCCAAATACCAGAAGATGAGGTCTTGGAAAGTCAATCTCAAGGAGATGAATTTCCAAGTAGTACTAGCTTTCCAGATTCTTTTTCTATGGAGAGATCTTGTACTCCACTTGCTGGCACCGAACACCGGGAAAGAAACAACAATGAAGAAAACTACTCTCAAGAGCATGTGCATCCTCGAAACGGATCACAACTTGATATGTCAGGCCTACCTGTGCAAACAAATACTGCATATCCTTTCTATATGCCAGAAGGTATGATGTCGGCACAAATGTACCAAAAGAACCTGCATGATATGCAAAACCATGCTGCCATGATGTCGCAGTACGGTCATTTTCATCCTTGCCCTCCCAACTTAAGTGGGATGGCATCCTATCCTTATTACCCTATGAATATATGTGTTCAACCTGGTCAAATGCCAGCAACTGCTAATACTTTTTCATGGCCGTCTTTTGGAAATCCATCTTCCAATGAAGCAAAATCGAACAAGTTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGAGGTCAGTTTGTGAGAAAGGTAAATGGTATGAATGTAGATCTTAATGGACAACCTGCATCAGCTGATGATGTCGAGGATGAAGATGACGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGATGATGATGGTTCAGCATATTAG 1659 42.86 MDCKELNLNEDCGGCGSGVKSGGDGFIDRTKVRILLCDNDPKSSEEVLKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPLAKGMKMLKYITRDEELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSHRSTNPEMGVATHQEDESGIASAPVEPPAVHPVEHQPDVPGISERRTGQLSSSCPRKSELKIGESSAFFTYVKSRTGKNKAVDVEDKAKRLLLDENHQETGQHAVRLPQIPEDEVLESQSQGDEFPSSTSFPDSFSMERSCTPLAGTEHRERNNNEENYSQEHVHPRNGSQLDMSGLPVQTNTAYPFYMPEGMMSAQMYQKNLHDMQNHAAMMSQYGHFHPCPPNLSGMASYPYYPMNICVQPGQMPATANTFSWPSFGNPSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGMNVDLNGQPASADDVEDEDDEEEQLSRDSSHDDDGSAY 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35008628 35013096 + Sed0015977.1 Sed08g2087 723863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2087 552 Pfam CCT motif 469 511 IPR010402 GO:0005515(InterPro)
Sed08g2087 552 MobiDBLite consensus disorder prediction 310 371 - -
Sed08g2087 552 SMART REC_2 32 147 IPR001789 GO:0000160(InterPro)
Sed08g2087 552 MobiDBLite consensus disorder prediction 514 552 - -
Sed08g2087 552 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160(InterPro)
Sed08g2087 552 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160(InterPro)
Sed08g2087 552 ProSiteProfiles CCT domain profile. 469 511 IPR010402 GO:0005515(InterPro)
Sed08g2087 552 MobiDBLite consensus disorder prediction 182 253 - -
Sed08g2087 552 MobiDBLite consensus disorder prediction 339 358 - -
Sed08g2087 552 Gene3D - 32 222 - -
Sed08g2087 552 SUPERFAMILY CheY-like 31 158 IPR011006 -
Sed08g2087 552 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 229 IPR045279 GO:0009736(InterPro)
Sed08g2087 552 MobiDBLite consensus disorder prediction 310 336 - -
Sed08g2087 552 MobiDBLite consensus disorder prediction 525 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2087 K12127 - - csv:101220107 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2087 Sed-Chr8:35008628 Sed14g0437 Sed-Chr14:4453361 5.50E-12 dispersed
Sed01g2330 Sed-Chr1:17608697 Sed08g2087 Sed-Chr8:35008628 9.40E-172 wgd
Sed12g1965 Sed-Chr12:30697397 Sed08g2087 Sed-Chr8:35008628 3.70E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39411 PF00072 Response_reg 2.60E-17 CL0304 Sed TR