Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2090 ATGGGTTGTGTGAACACGAAGCAGACCGTGTCTGTGACCCCTGCATTCGATGACTCCACCGCGATGGGGAACTCGGGTCGGACCCGGCGCGGGTTCGGAGCCAATGAGAAGGCTTCGAAGCCGAAAGGGTCCGGTGAGTCGGGTCGTGCGAGTTCTCATGGCGGAGGGGATGAGAGTTTGAGCTTTAGATTGGGGAATTTGAGTAAGTATGTGGAATGTGAGCAAGTGGCGGCGGGTTGGCCGGCTTGGCTTAGCGCCGTCGCCGGCGAAGCCATTCAGGGTTGGGTTCCGCTCCGGTCTGATGCTTATGAGAAGTTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGCGAACTTGAAACAGGGAGGATAGTTGCTTTAAAGAAGGTCCGGTTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCACGAGAGATAATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAAGGCTTAATTACGTCTCGTTTATCATGTAGTATTTACCTTGTGTTCGAGTACATGGACCACGACATTACCGGACTCCTATCCTGCCCTGACATTACCTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAAGTGGCTGATTTTGGATTGGCAAACTTTTGTAATTCCGGGCAGCGCCAACCTCTAACCAGTCGGGTTATCACTCTATGGTACCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGCGTTGGCTGTGTTTTTGCTGAACTCCTTGTTGGGAAACCAATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTTAAGCTATGCGGCTCCCCTCCAGACGAATACTGGAAGAAATCGAAACTTCCTCATGCTACTTTGTTCAAGCCACAACATCCTTATAATACTTGTTTACGGCAGACCTTCAAAGATTATCATTCGACGACCGTGAACTTGTTAGAAACTCTTCTTTCCATCGAACCATACAAGCGAGGAGTTGCGTCTTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCGTATGCGTGCGATCCATCGAGCATGCCTATATATCCTCCTAGCAAAGAGATTGATGCAAAACAAAGGGAGGAGTCTAAAAGGAAAAAAGGTAGTGGAAGATCCCGTGTACCGGATAGCAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTAGCACCAGCAGAGGACTCATCGGTCTCAGCTCAAGATTTGCTTAACATTAGTATGAATACACAAAATGTTAAAGAAGAGAAGGTTACCAATGGCAGCGAGGCACAAAAGCTGTCAGTTGATAAATTGGAAGAGTCTATACATGTAAAGAATGCATCTCAAGGTGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCGAGTGGCTTTGCATGGGCAAGACGACGAAGAGACGAGGCCTCTATTAGATCGCATTCAAGATCAAGTTCACGAGGACACATAATTAATGGGCTGGACCATTCTGCCATGTTACATTCAAGAAGCAATGTGGACTCTAAGTCTCATGAAACGGGAGACATGTTGTGCAATTCCATCAGCCGCTCAAGTTCGAAGGGACATGAATCAAATGAGAGATCCAAGGTTGTGATACGGAATCCGTGGGGTAAGTTTGAGCGTCCTGATTCGTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTTCGGCCGCACTTTACTTGCGAGATGAAATGCAATCAAAGAGAAGTAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTAACTCAATCTAGCAGAGTGGATGAGCTGCTAGACAGACACGAGAGACACATCCGACAGACAGTTCGAAGATCGTGGTTTCAAAGAGGTAAAAATTGA 2025 45.88 MGCVNTKQTVSVTPAFDDSTAMGNSGRTRRGFGANEKASKPKGSGESGRASSHGGGDESLSFRLGNLSKYVECEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGQRQPLTSRVITLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNTCLRQTFKDYHSTTVNLLETLLSIEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESKRKKGSGRSRVPDSRRLTRKHLGISKLAPAEDSSVSAQDLLNISMNTQNVKEEKVTNGSEAQKLSVDKLEESIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDEASIRSHSRSSSRGHIINGLDHSAMLHSRSNVDSKSHETGDMLCNSISRSSSKGHESNERSKVVIRNPWGKFERPDSFDTSDEYHSQEFSAALYLRDEMQSKRSNLSYQDQVDKVEYSGPLLTQSSRVDELLDRHERHIRQTVRRSWFQRGKN 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35029183 35034962 - Sed0024578.1 Sed08g2090 723866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2090 674 CDD STKc_CDK9_like 103 387 - -
Sed08g2090 674 SMART serkin_6 103 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2090 674 MobiDBLite consensus disorder prediction 15 57 - -
Sed08g2090 674 MobiDBLite consensus disorder prediction 407 436 - -
Sed08g2090 674 Gene3D Transferase(Phosphotransferase) domain 1 186 426 - -
Sed08g2090 674 FunFam probable serine/threonine-protein kinase At1g54610 186 426 - -
Sed08g2090 674 SUPERFAMILY Protein kinase-like (PK-like) 97 393 IPR011009 -
Sed08g2090 674 FunFam probable serine/threonine-protein kinase At1g54610 90 185 - -
Sed08g2090 674 Gene3D Phosphorylase Kinase; domain 1 90 185 - -
Sed08g2090 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2090 674 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Sed08g2090 674 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2090 674 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2090 674 PANTHER CELL DIVISION PROTEIN KINASE 103 387 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed08g2090 674 MobiDBLite consensus disorder prediction 558 573 - -
Sed08g2090 674 MobiDBLite consensus disorder prediction 398 446 - -
Sed08g2090 674 MobiDBLite consensus disorder prediction 522 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2328 Sed-Chr1:17583885 Sed08g2090 Sed-Chr8:35029183 6.00E-266 dispersed
Sed08g2090 Sed-Chr8:35029183 Sed08g2092 Sed-Chr8:35029183 2.60E-306 dispersed
Sed08g2090 Sed-Chr8:35029183 Sed08g2091 Sed-Chr8:35029183 2.60E-306 tandem
Sed01g2398 Sed-Chr1:18009800 Sed08g2090 Sed-Chr8:35029183 1.90E-49 wgd
Sed01g2327 Sed-Chr1:17583885 Sed08g2090 Sed-Chr8:35029183 0.00E+00 wgd
Sed11g2028 Sed-Chr11:34366316 Sed08g2090 Sed-Chr8:35029183 3.70E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79667 PF00069 Pkinase 2.40E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2090 - - - 0.0