Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2091 | ATGGCACGAGAGATAATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAAGGCTTAATTACGTCTCGTTTATCATGTAGTATTTACCTTGTGTTCGAGTACATGGACCACGACATTACCGGACTCCTATCCTGCCCTGACATTACCTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAAGTGGCTGATTTTGGATTGGCAAACTTTTGTAATTCCGGGCAGCGCCAACCTCTAACCAGTCGGGTTATCACTCTATGGTACCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGCGTTGGCTGTGTTTTTGCTGAACTCCTTGTTGGGAAACCAATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTTAAGCTATGCGGCTCCCCTCCAGACGAATACTGGAAGAAATCGAAACTTCCTCATGCTACTTTGTTCAAGCCACAACATCCTTATAATACTTGTTTACGGCAGACCTTCAAAGATTATCATTCGACGACCGTGAACTTGTTAGAAACTCTTCTTTCCATCGAACCATACAAGCGAGGAGTTGCGTCTTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCGTATGCGTGCGATCCATCGAGCATGCCTATATATCCTCCTAGCAAAGAGATTGATGCAAAACAAAGGGAGGAGTCTAAAAGGAAAAAAGGTAGTGGAAGATCCCGTGTACCGGATAGCAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTAGCACCAGCAGAGGACTCATCGGTCTCAGCTCAAGATTTGCTTAACATTAGTATGAATACACAAAATGTTAAAGAAGAGAAGGTTACCAATGGCAGCGAGGCACAAAAGCTGTCAGTTGATAAATTGGAAGAGTCTATACATGTAAAGAATGCATCTCAAGGTGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCGAGTGGCTTTGCATGGGCAAGACGACGAAGAGACGAGGCCTCTATTAGATCGCATTCAAGATCAAGTTCACGAGGACACATAATTAATGGGCTGGACCATTCTGCCATGTTACATTCAAGAAGCAATGTGGACTCTAAGTCTCATGAAACGGGAGACATGTTGTGCAATTCCATCAGCCGCTCAAGTTCGAAGGGACATGAATCAAATGAGAGATCCAAGGTTGTGATACGGAATCCGTGGGGTAAGTTTGAGCGTCCTGATTCGTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTTCGGCCGCACTTTACTTGCGAGATGAAATGCAATCAAAGAGAAGTAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTAACTCAATCTAGCAGAGTGGATGAGCTGCTAGACAGACACGAGAGACACATCCGACAGACAGTTCGAAGATCGTGGTTTCAAAGAGGTAAAAATTGA | 1587 | 43.54 | MAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGQRQPLTSRVITLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNTCLRQTFKDYHSTTVNLLETLLSIEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESKRKKGSGRSRVPDSRRLTRKHLGISKLAPAEDSSVSAQDLLNISMNTQNVKEEKVTNGSEAQKLSVDKLEESIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDEASIRSHSRSSSRGHIINGLDHSAMLHSRSNVDSKSHETGDMLCNSISRSSSKGHESNERSKVVIRNPWGKFERPDSFDTSDEYHSQEFSAALYLRDEMQSKRSNLSYQDQVDKVEYSGPLLTQSSRVDELLDRHERHIRQTVRRSWFQRGKN | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 35029183 | 35034962 | - | Sed0024578.2 | Sed08g2091 | 723867 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2091 | 528 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 77 | 89 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2091 | 528 | ProSiteProfiles | Protein kinase domain profile. | 1 | 241 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2091 | 528 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 39 | - | - | |
Sed08g2091 | 528 | MobiDBLite | consensus disorder prediction | 376 | 437 | - | - | |
Sed08g2091 | 528 | MobiDBLite | consensus disorder prediction | 412 | 427 | - | - | |
Sed08g2091 | 528 | MobiDBLite | consensus disorder prediction | 252 | 300 | - | - | |
Sed08g2091 | 528 | FunFam | Putative serine threonine-protein kinase | 1 | 44 | - | - | |
Sed08g2091 | 528 | Gene3D | Transferase(Phosphotransferase) domain 1 | 40 | 280 | - | - | |
Sed08g2091 | 528 | MobiDBLite | consensus disorder prediction | 261 | 290 | - | - | |
Sed08g2091 | 528 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 247 | IPR011009 | - | |
Sed08g2091 | 528 | FunFam | probable serine/threonine-protein kinase At1g54610 | 40 | 280 | - | - | |
Sed08g2091 | 528 | Pfam | Protein kinase domain | 2 | 241 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2091 | 528 | PANTHER | CELL DIVISION PROTEIN KINASE | 1 | 241 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed08g2091 | 528 | SMART | serkin_6 | 1 | 241 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2327 | Sed-Chr1:17583885 | Sed08g2091 | Sed-Chr8:35029183 | 4.50E-266 | dispersed | |
Sed08g2091 | Sed-Chr8:35029183 | Sed11g2030 | Sed-Chr11:34366316 | 6.70E-140 | dispersed | |
Sed08g2090 | Sed-Chr8:35029183 | Sed08g2091 | Sed-Chr8:35029183 | 2.60E-306 | tandem | |
Sed08g2091 | Sed-Chr8:35029183 | Sed08g2092 | Sed-Chr8:35029183 | 3.50E-306 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79668 | PF00069 | Pkinase | 7.90E-56 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2091 | - | - | - | 0.0 |