Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2093 ATGGCGGAGAAGACGAGTAATTTGAATAACAACAACAACAAAGACGTTTCTCTAAGAGAACTTAGCGAAAGAGTGTCTGAATTCGCTCGAGTTAGAGGTTGGGATAAGTATCATAGCCCTAGAAACCTCCTCCTTGCCCTTGTGGGAGAAGTGGGGGAGCTGTCGGAGATATTCCAATGGAAAGGAGAAGTGGATAAGGGGCTGCCCAACTGGTCGGCGGCGGACAAAGAACATTTGGAAGAGGAAGTTTCGGACGTCTTACTTTATTTGCTTCAACTTGCAAATGTTTGTGGTCTTGATCTTGGTCGGGCTGCCCTTTCCAAGATCCTTAAAAATGCCACTAAGTACCCTCTCTCTCCAACATAA 366 45.9 MAEKTSNLNNNNNKDVSLRELSERVSEFARVRGWDKYHSPRNLLLALVGEVGELSEIFQWKGEVDKGLPNWSAADKEHLEEEVSDVLLYLLQLANVCGLDLGRAALSKILKNATKYPLSPT 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35059199 35061240 + Sed0016148.1 Sed08g2093 723869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2093 121 PIRSF UCP029826_pph 8 121 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Sed08g2093 121 Gene3D - 7 120 - -
Sed08g2093 121 SUPERFAMILY all-alpha NTP pyrophosphatases 16 119 - -
Sed08g2093 121 CDD NTP-PPase_RS21-C6_like 23 112 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Sed08g2093 121 PANTHER - 11 119 - -
Sed08g2093 121 Pfam MazG-like family 50 119 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2093 K16904 - - csv:101204836 179.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2093 Sed-Chr8:35059199 Sed12g0623 Sed-Chr12:3699937 9.20E-37 dispersed
Sed12g0463 Sed-Chr12:2792582 Sed08g2093 Sed-Chr8:35059199 2.20E-38 transposed
Sed08g0245 Sed-Chr8:1423333 Sed08g2093 Sed-Chr8:35059199 6.20E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g605 Blo04g00783 . . . . . . . . . Cma10g00213 Cma11g00120 Car10g00199 . Sed08g0273 . . Bhi02g00098 Tan09g2046 Cmetu02g0607 . . . . Cla06g01565 Cam06g1729 Cec06g1790 Cco06g1790 Clacu06g1697 Cmu06g1643 Cre06g2454 . . Cone13ag0051 Cone19ag0056 Lsi02g00094 . . . . . . Bda14g00864 . Bpe15g00591 . . Sed08g2093 Cmo10g00229 Cmo11g00192 . . . . . Cpe18g00776 Bhi08g01132 Tan05g2414 . Lac10g0123 Hepe07g2487 . . . . . . . . . Lsi06g01440 Csa01g00265 Chy02g02468 Cme02g01855
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003712 1 2 1 0 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 1 3 2 2 2 2 1 2 3 1 46