Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2095 ATGGTTTCTGAGAGAGTTCCTATTGAATGGAAGAAGAAGAGTGTTTGTGTAATTGGAGCTGGTCCATCCGGGCTTGTGGCAGCCAGAGAGCTAAGGAAAGAAGGCCACACGGCTGTCATTTTCGAGCAAAACCACGACATTGGTGGCCAATGGCTCTACGACCCACATGTCGAAAAAGAACATCCTTTAGGGAAAGCGTCAAACTTCCTCAACGTTCACAGCAGCGTTTACGCCTCGTTACGGCTCGCATCTCCGAGAGAGATCATGGGGTTTTCAGATTTCCCATTTTTGGTCAAGAAAGGGAGAGATACAAGGAGATTCCCTGGGCACAAGGAGCTGTTCTTGTATTTGAAGGACTTTTGTGATTGGTTTGGATTGAGAGAAATGATAAGGTTCAATACTAGAGTTGAATATGTGGGAATGTTGGATTGTTGTAGTGAAGATGTTGGAAAAGAAATTAAATGGGTTGTGAGAAGTAGAGATATTGATCATAATATTGGTGATGGGATTCTTGTTGAACAAGTTTTTGATGCTGTTGTTGTTGCTAGTGGTCATTATTCTCATCCTAGATTGCCCAACATTAAAGGAATGGATAAATGGAATGGAAAGCAAATTCATAGTCATGTTTATCGAGATCCCGAGCCATTTTGTGATGAGGTGTTGGTTGTAGTGGGAAATTCTCAAAGTGGGCAAGACATATCAATAGATCTATTGGGAGTGGCAAAGGAAATTCATCTAAGCACAAAATCCATAGACACCATCACTGAGGGTTTATCCAAAGTCATCAAAAAACATCAAAACTTGCATCTTCAACCACAGATTGAATCTCTTGAAGATGATGGGCGAGTGCTGTTTTTGGATGGGTCCTCCATTGTTGCTGATACAATTTTATATTGCACTGGGTATTCATACACATTTCCATTTCTTGACACCAAAGGCATAGTTTTTGTGGATGATGATCGAGTAGGTCCTTTGTATGAACATACTTTTCCCCCATCCTTGGCTCCCTCTCTTTCATTTATGGGCATTCCACGAAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCCCAACTGCTGTCTGGGAAAAGAACATTGCCATCATGGGATGATATGATGCAATCCATCAAAGAGTTCTATCATTCAAAGGATATTTCTGGCATTCCAAAGCATAATACCCACGATTTAGCTGATTTTGAGTATTGTGACAAGTATGGCGATAACGTTGGATATCCGCATTTGGAGGAATGGAGGAAAAAATTGTGCATATCATCCCTTATAAACTACTTTACCAACCTCGAAACATTTCGAGATTCGTGGGATGACGATGAGGATCTTCAAGAGGCCCTTCAAAGTCCTCATTTCACTCAACTTGGAGCTCAAGCTTTTCCTCTGTAA 1410 41.13 MVSERVPIEWKKKSVCVIGAGPSGLVAARELRKEGHTAVIFEQNHDIGGQWLYDPHVEKEHPLGKASNFLNVHSSVYASLRLASPREIMGFSDFPFLVKKGRDTRRFPGHKELFLYLKDFCDWFGLREMIRFNTRVEYVGMLDCCSEDVGKEIKWVVRSRDIDHNIGDGILVEQVFDAVVVASGHYSHPRLPNIKGMDKWNGKQIHSHVYRDPEPFCDEVLVVVGNSQSGQDISIDLLGVAKEIHLSTKSIDTITEGLSKVIKKHQNLHLQPQIESLEDDGRVLFLDGSSIVADTILYCTGYSYTFPFLDTKGIVFVDDDRVGPLYEHTFPPSLAPSLSFMGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSWDDMMQSIKEFYHSKDISGIPKHNTHDLADFEYCDKYGDNVGYPHLEEWRKKLCISSLINYFTNLETFRDSWDDDEDLQEALQSPHFTQLGAQAFPL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35068646 35073712 - Sed0025079.1 Sed08g2095 723871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2095 469 SUPERFAMILY FAD/NAD(P)-binding domain 11 246 IPR036188 -
Sed08g2095 469 PRINTS Flavin-containing monooxygenase (FMO) signature 37 61 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 PRINTS Flavin-containing monooxygenase (FMO) signature 13 29 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 PRINTS Flavin-containing monooxygenase (FMO) signature 286 313 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 PRINTS Flavin-containing monooxygenase (FMO) signature 351 364 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 Gene3D - 15 442 IPR036188 -
Sed08g2095 469 Pfam Flavin-binding monooxygenase-like 12 251 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 Pfam Flavin-binding monooxygenase-like 269 387 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Sed08g2095 469 PANTHER DIMETHYLANILINE MONOOXYGENASE 12 461 IPR050346 -
Sed08g2095 469 FunFam Flavin-containing monooxygenase 193 299 - -
Sed08g2095 469 Gene3D - 193 299 IPR036188 -
Sed08g2095 469 SUPERFAMILY FAD/NAD(P)-binding domain 255 446 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2095 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0770 Sed-Chr4:6199006 Sed08g2095 Sed-Chr8:35068646 1.10E-97 dispersed
Sed08g2095 Sed-Chr8:35068646 Sed13g0078 Sed-Chr13:496213 3.00E-06 dispersed
Sed08g2095 Sed-Chr8:35068646 Sed03g1251 Sed-Chr3:8045779 3.60E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33