Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2125 ATGGCTGCAAAGCTTCTGCATTCTTTAGCTGATGAAAATCCAGATCTGCAGAAGCAAATAGGTTGCATGACTGGGATTATGCAGTTGTTTGATCGTCAACATATACTCAGTGGAAGACATTTGAGGCACAAACGCCTTCCTCCTGGCACTTCTCATCCAAATGTTGGCAACCCAAGGAAAGATTACAATGTCTTTCAGAGAGAGGCAATTGACATGTCTCGAAACGAGAGTTTCAATGAGAAACAAAGGTTCAATAAAGATTTATCGAGAGCTTCTTTCTCCTCGTGCTCATCTTCGTTATCCTCTTGCGAGTACAACAAAACAGCTCAGTCGCAAGCTTCCTCCTTTGATCAGATACTTTTATCAAGAACACCAGCAAGGGATTCTGTAGCAAACCAGTCAAATACCTCTCCTCGTGTGGGGAGGCAACCCCTTGATCTTCGAGATGTTGTGAAGGATTCTATGTATAGGGAAGCCAGAATGTTGTCGGTTAAAACATCTACGAATGAGGAAGCACAAAGTCGTATTATGAAGCATAAAGACTCTCCAAGGCCTTTACAGCTATCCCAATCTACAGATGGGGCTTCTAAAGTTGATACAAATTGGAATCAAAAGATGCCTATTGATCTGAAGGAGTCTCTTCTGGTTCTTGCTAAACTTCGAGATGCACCATGGTACTATAATGAAGTCGGAGAGCATGAACGACCACCTCACGAAGTAAAAGATAGATTTTTGCAACCATTCTCTAGAGATGGTCCTCGGTTTTCTTACGATGGTAGAGAGGTTGATCAATTGTCCTTTGAATCACGAGATACCATTCGGTCAGCTCCAAAATTTAAAGACTTTCCAAGACTCTCATTGGACAGCAGGGAGAGTTCAATTCAGGGTTCCAAATCTATGTCTAAACTTTCAAAGAACTTGCACAATAGTGATTTCTCAAGTGAAAAATCTACTGATCCACCACGACCATCAGGATCTCGAAAGCATCCCCCAAGCGTTGTGGCAAAGTTGATGGGATTAGAAGCACTTCCAGGTTCACCCTTAGCCAGTGATCCTCGGGCAAAAGGTGACCCCTTTGTTAGCTCCTTGGATGGCTCAAACTCAATGATGCCTATTAGGTCTTCTGACTCTCCTCGGAACACATTGAAAGGCCCAACTTCTCCACGATGGAAGAACCCTGATTTAGTTATGAAACCTATACCAAATTCAAAGTTTCCTGTAGAAGTTGCACCATGGAGGCAGCAAGGTGGAAGTCAAGCCTTTCGTAAACCTGCTCTGAAGCACACAAAAGCATTAGCTGGATCGTCTAACCCCTTTCCTTCATTTTATAGCGAAATTGAAAAAAGATTGGAAGACTTGGAGTTTAAACTATCAGGGAAAGATCTTAGAGCGCCAAAACAGATCCTTGAGGCTATGCAATCGAAGGGGCTCTGGGATACTAGGAAGGAGGAGGAACCTTCTATCAATGAACCAAAACGGGAGAGTAGTGTTAGTTCTAGGTTGATGAGCGAACGAAGTCGGCAAAGGAACCAAAAGGCTGCAACAACTACCAGGTCTGATTCTTCCAGGAGTGGGGGATCTCCAATTGTTATCATGAAACCAGCAAAACTTGTAGAAAAGTATGGAACTCCAGCATCATCAGTTATTCAAATCGACGGCCTTCCCGGTCTCCCCAAGCTTCAGAAAGCCTCACATGGTAAAAATAACTCCGCGGGTTTCCAATCAATAAAAGTTACATCTCCTGAAAATAGTCACAGGGACTCTGGTGCAAGTTCCACCAAAAAGAAAGAGAACGCAAAAAATGTAAGGCCAGCACATTCTTCTTCAAAGTCTCATCATTTGCCAAAGGAGAACTCTGTAAGTTTGACAAAAACCTCAGGCTCATTGAGCCCAAGGCTACAACAGAAGAAGGCTGAGCAAGAAAAACGATCTCGACCACCAACTCCTCCATCTGACACAAACAAAACCAGATGTAAATCCAACAGACAGGGAACTGATTCAGGTTCTCAGGTTGGAAAACCGAGAATGAAACCTTCACACGTGTCCCAAATGGATGACCAATTGAGTGAGATAAGTAATGAGTCAAAAACTTTGAGTAACCAAGGAGATGACATATCTCAACTGTTTGACAGTACTTTATCCTTGGACTCAAAGACCTATATAGAAGTCACCAGCAGCGAACTTCCTGCAGACATTAATGGTGGCCATTGCTTACAAATGAAGACTTCAAAGCTCTCAGATTCGCGTTCAATTGAAAATGCAGAACTTGCTACTCCAGCTCCTGAACATCCTAGTCCGGTCTCCATTCTCGATTCCTCTATATATAGAGATGACGAGACATCCCCATCTCCTGTTAAGCAGATATCAAAAGCCGTTACAGGCAATAGAGCTCCAGTCTCTGGAGATTGTGGTGAATATCAACGGATTGCCACAGATAATAGTGTAGAGCCTTGTCTTAGCACAGAAATCAACCGCAAGAAACTGCAGAACATCGACAACTTGGTTCAGAAGCTCAGGCGCCTGAACTCTCACTACGACGAAGCAAAAACAGATTACATTGCATCATTGTGTGAGAATACTGATCCAGATAACAGATACATATCTGAAATATTGTTAGCTTCTGGCCTCTTACTTCGGGACCTCGGCTCGGGCTTGGCCACATTTCAACTCCACCCTTCTGGTCATCCAATCAACCCTGAGCTATTCTTCGTTTTGGAGCAAACCAAGACGAGCAATTTGCTAAGAAAGGATGACTGCAGCTCTCTGAAAGTTGCAGATTCAAAACTGAAGCAGGAGAAATCTCGTCGAAAACTCATTTTTGATATTGTTAATGAGATCCTTGCCAGAAAGTTATCTGTCGTTGCTACATCACCTGAGCCTTGGACAACATCCAAAAAACTAGCTACAAAAACTATTAGTGCCCAAAAGCTTCTGAAGGAGCTATGTTCCGAAATCGAAGAGTTCAAAACCAAGAAACCCGATTGCATCTTCGAAGATCAGGATGATGGTTTGAAAAACATCTTAAAGGAGGATGTGATGCAAAGATCTGAGAGTTGGACTGATTTCTTTGGTGACATCTCCAACGCTGTCCTCGACGTTGAAAGATTGATCTTCAAGGACTTAGTTGACGAAATAGTATATGTTGAGGCAGCTCATTTACGCGCCAAGTCAGGCAGACGAAGACAGTTGTTTACTTGA 3198 43.03 MAAKLLHSLADENPDLQKQIGCMTGIMQLFDRQHILSGRHLRHKRLPPGTSHPNVGNPRKDYNVFQREAIDMSRNESFNEKQRFNKDLSRASFSSCSSSLSSCEYNKTAQSQASSFDQILLSRTPARDSVANQSNTSPRVGRQPLDLRDVVKDSMYREARMLSVKTSTNEEAQSRIMKHKDSPRPLQLSQSTDGASKVDTNWNQKMPIDLKESLLVLAKLRDAPWYYNEVGEHERPPHEVKDRFLQPFSRDGPRFSYDGREVDQLSFESRDTIRSAPKFKDFPRLSLDSRESSIQGSKSMSKLSKNLHNSDFSSEKSTDPPRPSGSRKHPPSVVAKLMGLEALPGSPLASDPRAKGDPFVSSLDGSNSMMPIRSSDSPRNTLKGPTSPRWKNPDLVMKPIPNSKFPVEVAPWRQQGGSQAFRKPALKHTKALAGSSNPFPSFYSEIEKRLEDLEFKLSGKDLRAPKQILEAMQSKGLWDTRKEEEPSINEPKRESSVSSRLMSERSRQRNQKAATTTRSDSSRSGGSPIVIMKPAKLVEKYGTPASSVIQIDGLPGLPKLQKASHGKNNSAGFQSIKVTSPENSHRDSGASSTKKKENAKNVRPAHSSSKSHHLPKENSVSLTKTSGSLSPRLQQKKAEQEKRSRPPTPPSDTNKTRCKSNRQGTDSGSQVGKPRMKPSHVSQMDDQLSEISNESKTLSNQGDDISQLFDSTLSLDSKTYIEVTSSELPADINGGHCLQMKTSKLSDSRSIENAELATPAPEHPSPVSILDSSIYRDDETSPSPVKQISKAVTGNRAPVSGDCGEYQRIATDNSVEPCLSTEINRKKLQNIDNLVQKLRRLNSHYDEAKTDYIASLCENTDPDNRYISEILLASGLLLRDLGSGLATFQLHPSGHPINPELFFVLEQTKTSNLLRKDDCSSLKVADSKLKQEKSRRKLIFDIVNEILARKLSVVATSPEPWTTSKKLATKTISAQKLLKELCSEIEEFKTKKPDCIFEDQDDGLKNILKEDVMQRSESWTDFFGDISNAVLDVERLIFKDLVDEIVYVEAAHLRAKSGRRRQLFT 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35232912 35238597 - Sed0016442.1 Sed08g2125 723901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2125 1065 MobiDBLite consensus disorder prediction 588 603 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 649 672 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 563 587 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 236 257 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 184 200 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 476 491 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 361 387 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 548 688 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 415 438 - -
Sed08g2125 1065 Pfam Domain of unknown function (DUF4378) 865 1044 IPR025486 -
Sed08g2125 1065 Pfam DUF761-associated sequence motif 330 345 IPR032795 -
Sed08g2125 1065 PANTHER LONGIFOLIA PROTEIN 1 1063 IPR033334 GO:0051513(InterPro)
Sed08g2125 1065 MobiDBLite consensus disorder prediction 492 526 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 163 200 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 743 767 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 464 530 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 614 634 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 287 331 - -
Sed08g2125 1065 Coils Coil 824 851 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 343 399 - -
Sed08g2125 1065 Coils Coil 681 701 - -
Sed08g2125 1065 MobiDBLite consensus disorder prediction 288 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0069 Sed-Chr5:370203 Sed08g2125 Sed-Chr8:35232912 3.40E-23 dispersed
Sed05g0070 Sed-Chr5:370203 Sed08g2125 Sed-Chr8:35232912 3.50E-15 dispersed
Sed08g2125 Sed-Chr8:35232912 Sed11g2051 Sed-Chr11:34498567 1.90E-56 dispersed
Sed01g2289 Sed-Chr1:17331781 Sed08g2125 Sed-Chr8:35232912 0.00E+00 wgd
Sed11g2050 Sed-Chr11:34498567 Sed08g2125 Sed-Chr8:35232912 1.00E-91 wgd
Sed12g2015 Sed-Chr12:31010966 Sed08g2125 Sed-Chr8:35232912 2.60E-196 wgd
Sed03g0260 Sed-Chr3:1558078 Sed08g2125 Sed-Chr8:35232912 6.00E-81 wgd
Sed08g0282 Sed-Chr8:1668267 Sed08g2125 Sed-Chr8:35232912 5.50E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g459 Blo04g00797 . Bda06g00519 Bda15g00627 . . . Bma12g00962 Cmo13g01113 . . Cma11g00213 . Car11g00192 Sed08g0284 . Cpe04g01455 Bhi02g00090 Tan09g2035 Cmetu02g0174 . Hepe09g0278 . . Cla06g01534 Cam06g1692 Cec06g1755 Cco06g1754 Clacu06g1660 Cmu06g1606 Cre06g2418 Cone2ag0795 Cone16ag0214 Cone13ag0031 Cone19ag0040 Lsi02g00125 Csa01g00608 Chy12g01492 Cme12g01932 . Blo15g00341 Bda11g01764 Bda14g00886 Bpe07g00753 Bpe15g00573 Bma03g00858 . Sed08g2125 . Cmo11g00215 Cma13g01068 . Car13g00904 Car18g00008 . . Bhi08g01076 Tan05g2350 Cmetu12g0276 Lac10g0173 Hepe07g2455 . . Cla04g01147 Cam04g1203 Cec01g1715 Cco01g1760 Clacu04g1230 Cmu04g1210 Cre01g1506 . Csa01g00300 Chy02g02436 Cme02g01823
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003334 4 1 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 3 2 49